Detailed information on CNT0001073 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9T014|SPA2_ARATH, E-value = 2e-16

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001073

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.4030.2150.220.5870.12800.1260.1182.4985.1512.9731.6242.9122.2091.34leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.5

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MQITLLQLGYLRKYLYFEFGELCNDSVDILLCS*

>peptide 2 (41 aa)
MLQFTLEIVRIGMWPKKVKNNLRYLSYILRWFAKLCTLLQV*

>peptide 3 (35 aa)
MEGLILIFQVLRLQLEARMVLLLIKNLLRYQFLLI*

>peptide 4 (42 aa)
TKSLTLVTKIKSLTQTGLFHYPLKFSFHDLVQTFFFSLFTAP*

>peptide 5 (31 aa)
MTLLIYYYVVEMLTRSKLSCVCWNNVFFYTMK

>peptide 6 (50 aa)
HQVTNSSHKNKVTNSNWLISLPSEIQFSRFSSNFFFFTIHCTVKTLFTNL*

Sequence

>CNT0001073
GCACCAAGTCACTAACTCTAGTCACAAAAATAAAGTCACTAACTCAAACTGGCTTATTTCATTACCCTCTGAAATTCAGTTTTCACGATTTAGTTCAAAC
TTTTTTTTTTTCACTATTCACTGCACCGTGAAAACCCTCTTCACTAATCTTTGACGCCTCAGAAACCCTTTTCACCACCAACCTTGCTTTTCAATCTCCT
TCTTTGCCGCCTTCAAATTCCTAAGGCTTTTCTGGTGCGTCGCCATCAGTGGCTCCGACCTCGACACTTGCATCGTTCTAATCCCCATCAGCTTCAAGTC
TCCCACATTGCTTGATTTCAACGCGTGGTTTTCAAGAAGGAGAAGATTAACCTCATTGGACACAACGAGGAGATTCTCCTCTTCTCTGGCGGGAAACCTC
AAGGCTAAGCTTCATTAATCATGTGTTTAAATCTAATAGTAGTAAAATCATCATACACATTTACATAGGAATGAGGAAGAACTATTTATACATTGGACCA
TGGAGGGACTAATTCTCATTTTTCAAGTGTTACGTCTGCAATTGGAGGCAAGGATGGTGCTATTATTAATCAAGAATTTATTGAGGTATCAATTCCTCCT
AATTTGATAGTTGGGGCATCAGATTGAGGAATTGTCATCAAATATTGACCAAGAAGATGCAAAATCAGATTTGTTTGAAGTGCAGAAGCAGAACAATGCC
TTCAAACTGGTAGAAAAAATCAAGTGCTTTCTAAAACAAATGCTTCAATTCACGCTGGAAATCGTGAGAATTGGTATGTGGCCCAAAAAAGTGAAGAACA
ACCTAAGATACTTAAGTTACATTCTTCGATGGTTTGCGAAATTATGCACGTTATTGCAAGTTTAAAGTGCAGGGTGTACTAAGAAATGTTGATTTTAATA
ATCTTACAAATGTAATTTGCTCTCTAAGCTTTGATTAGAATGCAGATTACTTTGCTTCAGCTGGGATATCTAAGAAAATATTTATATTTTGAGTTTGGTG
AACTTTGCAATGACTCTGTTGATATATTATTATGTAGTTGAGATGTTAACTAGATCGAAACTCAGTTGTGTTTGCTGGAATAATGTATTTTTTTATACAA
TGAAAAG