Detailed information on CNT0001076 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0001076

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)5.1775.2614.5270.75500000000000.191leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.56

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVNCLLFYADVTNNCNVNKVYWSTCNVLCCCCSV*

>peptide 2 (41 aa)
MFLGRKWYKYKICFLSSSFHESFNVVLTLKLVYLVVQLAKGK

>peptide 3 (63 aa)
ENTQHTQTHITQTHNTQTFFLWSVSRHHTTAQLQIHSCSWSRSQIQAHVANHAKDPHYRTPPN*

>peptide 4 (38 aa)
MFVIVCIHLMQRKLKYVILHKASVCMSACLVVIDHEGG*

>peptide 5 (30 aa)
MKVDKIIVTPDFHVFVHCKILSHFLFYCNF*

>peptide 6 (65 aa)
KTHNTHKRTSHKPTTHKLSSFGVLAATTPPPNYRSTLVLGRGRKSRLMWPTTPKIRTTEHPPIDS*

Sequence

>CNT0001076
GAAAACACACAACACACACAAACGCACATCACACAAACCCACAACACACAAACTTTCTTCCTTTGGAGTGTTAGCCGCCACCACACCACCGCCCAACTAC
AGATCCACTCTTGTTCTTGGTCGCGGTCGCAAATCCAGGCTCATGTGGCCAACCACGCCAAAGATCCGCACTACAGAACACCCCCCAATTGACTCGTGAA
ACCCTAACCTTCTCACACACACTTGCCACACCTTTGCTTGTTGCTTAATTGGAGTTTTAGTTGTCAATGGTTGGAAATGGCTTGAAGACTGCAATATTAT
TGTGAAGTTCTCCAGTAGGCAATGGCAGGTGGTCTGTTGTTGAAGCTTCCATTCAACACCATATTTCAGTATCTCCAGGTTGTCTGTAGTCGATGTTTGT
AATTGTATGTATTCATTTGATGCAACGAAAACTGAAATATGTTATTCTGCACAAGGCCTCGGTCTGTATGTCTGCATGTTTAGTGGTAATTGACCATGAA
GGTGGATAAAATTATTGTAACTCCTGATTTTCATGTATTTGTTCATTGCAAGATATTGAGCCACTTCTTGTTTTATTGCAATTTTTAGGTGTTTAATTAG
TAGATTTGTCAGTGTTGATTAGTCATGGTTAATTGCCTTTTGTTTTATGCAGATGTTACAAACAATTGCAATGTGAATAAGGTGTATTGGTCCACGTGCA
ATGTTCTATGTTGTTGTTGTAGTGTTTGACTATTATGTTCCTTGGAAGGAAATGGTATAAATACAAAATATGCTTCCTTAGTTCTTCATTTCATGAAAGT
TTTAATGTCGTATTGACTTTAAAATTGGTTTACTTGGTTGTGCAATTGGCTAAGGGGAAAG