Detailed information on CNT0001078 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P23472|CHLY_HEVBR, E-value = 7e-10

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001078

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.0141.7073.92501.1830.2120.6650.3120.69500.4530.330.28500leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.25

Peptides detected in this lncRNA

>peptide 1 (39 aa)
LFITFYYSKQMHTIHLVSESSITSLRQFQMLVSRFGELN*

>peptide 2 (39 aa)
MTKSMPSNTAFPSGRDKEPESPRNVPQVIRHIFGILMGS*

>peptide 3 (80 aa)
LIYNFLLFEANAHHSFSVRIQHNITSSIPNVGLQVWRAELVLSCIRTWRWNWLGGFITCTCCKYSVPNSTVFHCCRLHKL*

Sequence

>CNT0001078
CTTATTTATAACTTTTTACTATTCGAAGCAAATGCACACCATTCATTTAGTGTCAGAATCCAGCATAACATCACTTCGTCAATTCCAAATGTTGGTCTCC
AGGTTTGGAGAGCTGAACTAGTATTATCTTGCATTAGAACTTGGCGCTGGAACTGGCTTGGTGGGTTTATTACTTGCACGTGTTGCAAATACAGTGTTCC
TAACAGCACTGTGTTCCATTGTTGTCGTCTTCATAAACTTTGATACCAAGCGTGGACACTTTGCCTGAATGTGATTTGAGGTTACGTGCAAGGTCCCCGT
AGAACGATGGATCGTCATTCTCTATGACAAAGTCAATGCCATCTAATACTGCATTCCCAAGTGGGCGTGATAAGGAGCCAGAGTCACCCAGGAATGTACC
ACAAGTAATCCGACACATCTTTGGCATCCTTATGGGAAGTTAGATTGTAATTGAGAGCTCCTCCTCCAAAAGCAACACCTTGATCCCTTGCTTTTGACAA
CTCCTAATCACTCTTCCAATCTCAGTGCACCTATGAGTAGAGGAGTCACAAGTTAAGCCGGAGGTTCATCATTGATAATATATAATTTGGGGTTCAATTG
TTTCCTTATTTGTTTCTTCTTATTTTTTTGTCGTAAATTATTACTTGTAGCAGAATGATGAGTGCGGTAATGACAACAAAAGTTCATGTTTAGTTTCCAA
TTGATGATAGTGAGATAATTGATATATACTAGTATATTATTAGTTTCCTGACTTGTAACATTGGAGGGTCGTTGACTTGTTGGTTGTTGAATTGAAGAAC
TTTAGACTTGTTGATTACTGAATTGGAGGACTTAACGG