Detailed information on CNT0001079 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P23472|CHLY_HEVBR, E-value = 2e-09

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001079

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSHIHHLFTVTHRKIIYYFEKVAKKIRWCHEG*

>peptide 2 (30 aa)
MYLYPTYDLTALCSIVVVFINFDTKRGHFA*

>peptide 3 (39 aa)
MTKSMPSNTAFPSGRDKEPESPRNVPQVIRHIFGILMGS*

>peptide 4 (48 aa)
MLKTCNIINQVIYIFLLNVSLLRSICNKQLDCIIILGSFSYKNRMTLR*

Sequence

>CNT0001079
AATAACATAAATTAAATTAGTTTTATTTTTATTCGGGAGATTAGAAATATAATTAACAGGAAATAATCATGCTTAAGACCTGTAATATTATAAATCAAGT
TATTTATATTTTTTTATTGAATGTTTCCTTATTGCGTAGCATTTGTAACAAACAACTTGATTGCATTATTATTTTAGGATCCTTTTCTTACAAAAACAGA
ATGACATTACGATGAATATCTGTTGTTGTTTGGCAGAGTGGGTGGGTAGGATAGCTTTGCCATATTCACCCAACAGCCACTAGCTCAAAATCTATGATAA
TGTATATACAAAAGTTTCCACACATAGTTATGCTACAAAGAGGTCTTTCAGGTTTAAACTCATAAAATCATATCTAAATTTTACATGCATGCGGCAGTTA
CCTTTTGCTTCGTGTTTTCTGGACAAGGCACGACATAAATAGAAGATCACAAGCATTGCAAGGGTTACTCCCACCCCAACAATGAGCCATATCCACCACC
TGTTTACTGTAACTCATAGGAAGATAATTTACTACTTTGAAAAGGTCGCTAAAAAAATCAGATGGTGCCATGAGGGTTAGAGGGAAAATTCCAGATGTAT
GCTTAATTTTCATAGTATGAAGGCACCTGAATGAAAATGCTTCCGAAGAATCAAGAGATATATGACCAATGATAGCAAATATCCTTAAATACAAATTACA
GATTCAAAAGGTTAAAAACAATTTTTCAGTTTCCAACAACCAAGCACTGTAATTTCGTTAAATGTATTTATATCCTACATATGATCTCACAGCACTGTGT
TCCATTGTTGTCGTCTTCATAAACTTTGATACCAAGCGTGGACACTTTGCCTGAATGTGATTTGAGGTTACGTGCAAGGTCCCCGTAGAACGATGGATCG
TCATTCTCTATGACAAAGTCAATGCCATCTAATACTGCATTCCCAAGTGGGCGTGATAAGGAGCCAGAGTCACCCAGGAATGTACCACAAGTAATCCGAC
ACATCTTTGGCATCCTTATGGGAAGTTAGATTGTAATTGAGAGCTCCTCCTCCAAAAGCAACACCTTGATCCCTTGCTTTTGACAACTCCTAATCACTCT
TCCAATCTCAGTGCACCTATGAGTAGAGGAGTCACAAGTTAAGCCGGAGGTTCATCATTGATAATATATAATTTGGGGTTCAATTGTTTCCTTATTTGTT
TCTTCTTATTTTTTTGTCGTAAATTATTACTTGTAGCAGAATGATGAGTGCGGTAATGACAACAAAAGTTCATGTTTAGTTTCCAATTGATGATAGTGAG
ATAATTGATATATACTAGTATATTATTAGTTTCCTGACTTGTAACATTGGAGGGTCGTTGACTTGTTGGTTGTTGAATTGAAGAACTTTAGACTTGTTGA
TTACTGAATTGGAGGACTTAACGG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA20G04645.1 Uncharacterized protein protein coding CNT0001079 112 142 CDS Trans
GLYMA20G04645.2 Uncharacterized protein protein coding CNT0001079 112 142 CDS Trans