Detailed information on CNT0001080 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8LFT2|DRP3B_ARATH, E-value = 7e-23

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001080

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)000000000000.214000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.020.040.060.080.10.120.140.160.180.20.220.24

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MNLLQTNIAPQKAMSLTSQVKSKIIFQLKYATHLKDSRSSFAAVKGNRYKG*

>peptide 2 (35 aa)
MPGRSTSVISITFGEKIFTEELIESTWTLWPPCWK*

>peptide 3 (30 aa)
MLEINHNFVPVRKLSKNMSQLMWQSRSFEG*

>peptide 4 (72 aa)
MILRISCNDTLDQHESTPNQYCTPKSHEFNITSQIQDHFPIEVCHTFEGLSVIIRCSKGKSLQRMKFMDQYT*

Sequence

>CNT0001080
CATCAGGATCAGCAATGCGTGCCATCTGAAGAGCATTTGGTTCTGAGTTAGCCCAATCTGAATCACCCCGTACTACAGTTAGGATGAGACAGGTGGGAGT
TTTGATATATGACATGATCATTTTTTTAATCCGCGCTTCAATATCAGAAGACTGGTAACCAACAGGAACCTTTGGAATGCCTGGGAGATCTACAAGTGTG
ATATCAATAACATTTGGTGAAAAAATCTTCACGGAAGAGCTCATTGAGTCCACCTGGACCCTCTGGCCACCATGTTGGAAATAAATCACAATTTTGTTCC
GGTAAGGAAGCTTTCAAAGAATATGTCCCAGCTAATGTGGCAATCTCGGTCATTTGAAGGATAGATTATGATCCTCAGAATCAGTTGCAATGACACCTTA
GACCAACATGAATCTACTCCAAACCAATATTGCACCCCAAAAAGCCATGAGTTTAACATCACAAGTCAAATCCAAGATCATTTTCCAATTGAAGTATGCC
ACACATTTGAAGGACTCTCGGTCATCATTCGCTGCAGTAAAGGGAAATCGTTACAAAGGATGAAATTTATGGACCAATACACATGATCAACACAAAAAAT
GAAATCAAATTCATGCCTTCAGAAGAAAAGCAGAAGAATAATATGCC

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G10371.1 Uncharacterized protein protein coding CNT0001080 148 132 CDS Trans
GLYMA02G10371.2 Uncharacterized protein protein coding CNT0001080 148 132 CDS Trans
GLYMA10G43561.1 Uncharacterized protein protein coding CNT0001080 301 138 CDS Trans
GLYMA10G43561.2 Uncharacterized protein protein coding CNT0001080 301 138 CDS Trans
GLYMA18G52540.2 Uncharacterized protein protein coding CNT0001080 167 132 CDS Trans
GLYMA20G23240.1 Uncharacterized protein protein coding CNT0001080 374 137 CDS Cis