Detailed information on CNT0001092 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SS48|SDP6_ARATH, E-value = 2e-45

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001092

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.2020.1620.3311.7631.9220.4831.1341.7727.5035.6846.1845.4414.8613.8711.118leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.58

Peptides detected in this lncRNA

>peptide 1 (115 aa)
LKDLGNLDYFLGIEVRPQPNGALILTQCSYIRDLLGKTKMDEANPISSPIVGGCKLTKSGMKIWVNDLPTVTLIWRQKWRTVLVMNIVNLLLISLLGELV
LLSLKLTQHERHCLV*

>peptide 2 (35 aa)
MLSSMMGNTVSFVPLPKSSIKLRNQRPCFSLPLCQ*

Sequence

>CNT0001092
ACTCAAAGACCTGGGGAATCTTGACTATTTTCTGGGAATTGAAGTTAGACCTCAGCCCAATGGTGCTCTTATTCTGACTCAGTGTAGTTACATTAGAGAT
TTATTGGGAAAAACAAAAATGGATGAGGCCAATCCCATTTCTTCTCCAATTGTTGGAGGCTGCAAGTTGACTAAGTCAGGAATGAAAATTTGGGTAAACG
ACTTGCCCACGGTTACCCTTATCTGGAGGCAGAAGTGGCGTACTGTGCTCGTAATGAATATTGTGAATCTGCTATTGATTTCATTGCTAGGAGAACTCGT
CTTGCTTTCCTTGAAACTAACGCAGCACGAAAGGCATTGCCTCGTGTGATTGAAATATTGGCAAATGAGCACAAGTGGGACAATTCAAAGCAGAAGGAAG
AGTTGGAGAAGGCTACAGAGTTTTTGAAGACTTTTAAATCCTCCAAAAATGCTCAGTTCCATGATGGGAAACACAGTTAGCTTTGTACCTCTGCCTAAGT
CATCAATCAAATTAAGGAATCAAAGGCCATGTTTTAGTTTACCACTTTGCCAATGATCTTTGTATTTTGTTTTTTTGCTTTTCCCTCCCACCCCAAGTAA
TTCTTTACATTTATTTGTTCTTTTAACATTACGGGTTTTACAGAATAGAATTCCCTTAACTGAAGCAGTTTCACCCAACACTAATATCACCCCAAGTAAT
TTTTTATCTTTTTGATATAAAATGTTTTCTTTGTTAA