Detailed information on CNT0001103 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LXT9|CALS3_ARATH, E-value = 7e-37

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001103

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00000000000.2670.292000.695leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.550.60.650.70.75

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MELLLGMQIHCQIKFTNKFVCVYVAALACFCADFAF*

>peptide 2 (64 aa)
MLAGNVSPMTGENVKPAYGGEDEAFLRKVVTPIYDVIAKEAARSKKGRSKHSQWRNYDDLNEYFW

Sequence

>CNT0001103
ATGATGTTTATTTACTATTTCTGGCTGTATTTATAATTTTTGTAACCATTTTCTAATTTTTGTAGATGTTTTGATATATTTGGGTAAGAAGTTGAAAATG
GAGTTGCTATTGGGTATGCAAATCCATTGCCAAATAAAATTCACTAACAAATTTGTGTGTGTTTATGTGGCTGCCCTTGCTTGTTTCTGTGCAGATTTTG
CCTTTTAATCTACCTTGGAACATAGTTTCAAATGGATTTCCTTAACTTTTTAAATCATATGCCTTTGAGTTGTACGGTATGCTTGCTGGTAATGTTAGTC
CAATGACAGGAGAGAATGTCAAGCCAGCCTATGGAGGTGAAGACGAGGCTTTCTTAAGGAAAGTTGTAACTCCTATATATGATGTCATTGCAAAGGAAGC
TGCACGGAGCAAAAAGGGTAGGTCAAAGCATTCACAATGGAGGAACTATGATGATTTAAATGAATATTTCTGGT