Detailed information on CNT0001108 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q6DJH2|ADPPT_XENLA, E-value = 1e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001108

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.5650.4540.581.2370.270000.9690.9970.9642.3680.9091.9391.254leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.6

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MSCGVDIVSYDVPLGETITEFIQFFSSYFSSLEWDNIVNSGTSNDVLTEFYRPC*

>peptide 2 (40 aa)
MTEWRFWLFELGDRHCVSSESLPNISCYELQNNIEESGLY*

>peptide 3 (32 aa)
MINLVLDSQILISMYLIMVTVAIASEPVCLVG*

>peptide 4 (57 aa)
MGSGHIKVGPTSLSLLRSLPPSFPLALLDYQDYDKFGLRFPNFNFNVSHHGDCGHSI*

>peptide 5 (74 aa)
PNSVLLPSTRNIQMWRKKKILTETNHLSDIKLERTYVSVCAFRMGEGLRRWVVDISKWDQHHSHFFALSLLPSH*

Sequence

>CNT0001108
CCTAATTCTGTTCTGTTGCCATCCACACGCAACATACAAATGTGGCGGAAAAAAAAAATACTGACTGAGACGAACCACCTCTCTGATATAAAATTAGAAA
GAACCTATGTGTCTGTCTGTGCGTTCAGAATGGGAGAAGGCTTAAGGAGATGGGTAGTGGACATATCAAAGTGGGACCAACATCACTCTCACTTCTTCGC
TCTCTCCCTCCTTCCTTCCCACTAGCACTCCTCGATTACCAGGATTATGATAAATTTGGTCTTAGATTCCCAAATTTTAATTTCAATGTATCTCATCATG
GTGACTGTGGCCATAGCATCTGAACCTGTATGTCTTGTGGGGTAGACATTGTCTCCTATGATGTTCCACTGGGAGAAACAATTACAGAATTCATTCAATT
CTTCTCATCTTACTTTTCAAGTTTGGAATGGGATAACATAGTCAATTCAGGCACTTCGAATGATGTATTGACTGAATTTTACAGGCCATGCTGAAAGTCA
AAGGTGCATTTAGTTTCCAGGCATTGGAGCCTTAAAGAAGCATATGTTAAACCTATAGGGAGTGGACTTACTGAAGGGCTGAATAAAGTGGAATTTTCTC
ACACAAGATGGACAAATATATCAGCTAAAGTGGATGGGAAGGCTATGACAGAGTGGAGATTTTGGTTGTTCGAACTTGGGGATAGACATTGTGTTTCAAG
CGAGAGTTTACCCAATATCAGCTGCTACGAGTTACAAAACAACATTGAAGAAAGTGGACTTTACTGAAGAGGAATATACTCTAGGTCTTCATCTTCCAAA
CATAGTTGTTAAACTAGATGTAGACCAACATATTTCAATTTTACAAAAAGCATTTGATTTTTAGCCTAGAGGTTAGATGTTAGTGTAAATCTATGAAAAA
AATTGTAATGTGAAAGACAATAAGTATATCGAAAGAAAACACACACCTCCACTTTCTCAGTCAAAATAAGATTCTGTCTTGTTGGTCAATTTCTTAGAGT
CAACAAGGTTTTATACCGATCAACTTTTTTTTTATGATGGCCAAGGGCTAT