Detailed information on CNT0001114 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SJT7|VHAA2_ARATH, E-value = 6e-07

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001114

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.6951.1160.570000000.1820.3950.2160.3731.2720.514leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.4

Peptides detected in this lncRNA

>peptide 1 (50 aa)
FCFCQLSLCPECYSQNPFILKNQYEVRHRVKSNTPLQSTYESLQVESSWS*

>peptide 2 (62 aa)
MKSGTGLNPIHHFKAHMRVCKWSHHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTDLPPSMGP*

Sequence

>CNT0001114
CTTTTGCTTCTGCCAGTTGTCTCTGTGCCCTGAATGCTATTCCCAAAATCCTTTCATTTTGAAGAACCAATATGAAGTCAGGCACAGGGTTAAATCCAAT
ACACCACTTCAAAGCACATATGAGAGTTTGCAAGTGGAGTCATCATGGTCATGAGGAATTTGAGTTCAGTGAAGTCTTTGTACATCAACTCATACATACC
ATAGAATTTGTACTGGGAGCAGTCTCTAATACAGATTTACCTCCTTCTATGGGCCCTTAGCCAATAACATTGGCACTTGTATAAGCTGGAACTACGCTCA
AGAATTTATTAGATATGTGACACGTGATTGGGGCTTCAAAGACTCATTTGGTACAAGATATGCTAATCTTAGAGAATTATGGCTCTCAAGTCTAATTGTT
TGGTACGAGATATGCTAATCTTTGAGAACTATTGTCAGTCACATAGGTTTGATCACTAGACATCATGAGATTACATAGCTCAGTAGTGGTGAAGAACAGG
AGGAAACAATGAACTAAAAGGGAGAGCTCATCATGGTAGCTATGGATTTGATTGGAGAGTATCAGAAAAATGTAACTGCTTCTTTGCTAACCATAAAAAA
GAGATTGTAACTTTCTGAGATTCCTTTTTTTTTTCTTGAGC