Detailed information on CNT0001116 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FMW8|RIBF1_ARATH, E-value = 3e-40

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001116

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.912.2183.2211.2731.110.1740.5460.3841.2833.0771.7361.8961.522.3953.066leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.5

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MEAYIIKSVMDKNRFSADMNSVTNSIERGQVSSTRVRKY*

>peptide 2 (86 aa)
MATGQERFSTAQYKVSAPWSCLLNLAPKEGLYEKCSLFLDQKNVLQCRIVIDSKFVHIETDYGGLSDIFGSQNLQFLHIEFGDSCT*

>peptide 3 (35 aa)
MVPEEFQVEFSSVRHLNPQVRTTNLGIKQLVMPWS*

>peptide 4 (35 aa)
MVGGGVSRISHHLGRRHRHFSNHSALKLPLFCHPT*

Sequence

>CNT0001116
GCATTTTTAAAATCCATAATCGGTAAAAACAAAATACACTTAAAGACAATATATCAGGTGCACCTAGCAACACGCTGCAGTGAGTGAGTGGAACGCAATG
GTTGGTGGTGGCGTCTCTCGCATTTCCCACCATTTGGGGAGGAGGCATCGCCATTTCTCAAACCATAGTGCCCTCAAATTACCGCTGTTTTGTCACCCCA
CCTAAGTTCCCCGGCGAAATTCCTCTCCTTTTCGATTGTTTCAGGCCTCCTATAGTTGCTAAATGTGTCTGAAAGCGAGTTCTTTCTTCTTGGGTTTCTT
ATTGTTGTAACATGGTCCCAGAAGAGTTTCAGGTTGAGTTTTCAAGTGTGCGGCATCTCAATCCACAGGTGAGAACTACCAATTTGGGTATAAAGCAGCT
GGTGATGCCTTGGAGTTAGTTAAGCTTTGTGAAGAGTACGGAATGGAAGCTTACATAATAAAATCTGTTATGGACAAGAATCGTTTTTCTGCAGATATGA
ATTCTGTTACCAACTCCATAGAGAGGGGACAGGTCTCATCTACACGTGTTCGTAAATATTAATGGCCACTGGCCAAGAACGATTCAGTACTGCGCAGTAT
AAGGTGTCTGCTCCTTGGTCTTGCTTATTGAATCTAGCACCAAAGGAAGGATTATATGAGAAGTGTTCACTTTTCCTTGATCAGAAAAATGTGTTGCAGT
GTAGAATAGTTATTGACAGCAAGTTTGTCCATATAGAAACAGATTATGGAGGTCTGAGTGACATTTTTGGTTCTCAAAATTTGCAGTTCTTGCATATTGA
GTTTGGTGATTCCTGCACTTGATTCAGTTTAGATAATTATTTCTATTTAAAATTTATAGTCTACTGAATTATAGATGATTTTCATCCATCTCCCAAAGTA
AAGTGAAACTTCCAAATCTTAAAGCTAATACAAGTATATATGTACCTTTCTTCCTTTTCCCTCCTTTAATGCAATATGCCTCCCAACCAAGTGATGAAAT
TTGGTCAACTTTATTGATTAT