Detailed information on CNT0001118 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001118

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MHICKFKKINVNKRIQLKYSSRNKISTHTTQVTKLKRIIRKKQKRQ*

>peptide 2 (31 aa)
MAQWQLYLDEEEGLILTISPPPDYLANKINN*

>peptide 3 (52 aa)
MTIQLILINSHSNVAIILLALSMNFNGDHNSFQHSEINLPINKPRYLLLGSF*

Sequence

>CNT0001118
AATGAATTCTCACTTCAAGAACAAAGCCAAACGCATCCAGTAGAATTGCCTCCAGAATGACACACCATCATGAATAAGATGCAGCACAAGTTCACTAGGA
TATGCATATATGTAAATTTAAGAAAATAAATGTTAACAAAAGAATACAACTCAAGTACAGTTCAAGAAATAAGATATCTACACACACAACTCAAGTTACA
AAACTGAAAAGAATAATAAGGAAGAAGCAGAAAAGGCAGTAGTACTTGGGATTCCATCATTTATACTGAAATGATTTAAAGGCAGTAGCAGCTAGGCATA
TGGCCCAGTGGCAGCTGTATCTGGATGAGGAAGAAGGTTTGATACTAACCATTTCCCCTCCCCCTGACTACCTAGCTAATAAAATAAACAATTAATTTGC
TCACATGTACTCAAACGTACATCACCAATAACCATTGATTATCCTCATGACTGAAAAATGACCATTCAGCTCATCTTAATAAACTCCCACTCAAATGTGG
CAATTATTCTATTGGCACTGTCAATGAATTTTAATGGGGATCATAATTCATTCCAGCACAGTGAAATTAATCTCCCAATAAACAAGCCAAGGTACCTTCT
CCTGGGTTCCTTTTAAGCATCTAAGCATGGAAGGGATGCCTCAAACCAGTGGTATGTCTCCTGAATGAGAAATTAAATTAGAATCTCCAGAATCCAAGGA
ATATATATGAATTGGTAAAATATGAATTGGCAGCAATAATGAATACCAAGGGCAATAAGAATATATAATCTATGCAAATAATACCAACCAAACACAACAA
AAGTTACATAATATTGCAAACAGAAATAGAAAAAGAGTGAATAAAGAATAAACCAG

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G20811.1 Uncharacterized protein protein coding CNT0001118 284 152 UTR3 Trans
GLYMA10G42220.2 Uncharacterized protein protein coding CNT0001118 818 354 UTR3 Trans
GLYMA10G42220.2 Uncharacterized protein protein coding CNT0001118 234 137 UTR3 Trans
GLYMA20G24820.2 Uncharacterized protein protein coding CNT0001118 2310 856 UTR3 Cis