Detailed information on CNT0001119 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9ZU35|AB7G_ARATH, E-value = 3e-23

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001119

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MGPIMQFIQILPSYEQTINELKKADLHPCSFKEQPKIASTKLLSSLLQPSG*

>peptide 2 (45 aa)
MRNKFSPNTGYKKYMILYYLPKLHIISSDQNKKLKITGDYVESVM*

>peptide 3 (38 aa)
MTQQDHQSFFERYRHYQQNCSLWILDQPKIQQDLYDLDT

Sequence

>CNT0001119
CAAACCTGAAGTAATCCCATTCTGTCTTGTATTGAAGTCTGAGAATTTCCCATTCTCCAAAATACTGACCCAAAGATAATTGCCGACGCAATTGACATCC
TTGCCCGAACTTTGTTTGTTGGTGCATCACGGGAAGCCTAGTTAGCCAGACAATCACCAATCCAATGAATGAGAAATAAGTTTTCTCCTAATACTGGGTA
TAAGAAATACATGATCCTTTATTATCTTCCAAAACTACATATAATATCTAGTGATCAGAATAAAAAATTAAAGATAACAGGTGATTATGTTGAGTCTGTA
ATGTAATATGGAGAAAATAAATATTTAACTGCACAACATACAAGATGTGAAAACAATAAATAGCAATCCACTTTTGTGATTATATCTTGCCAAATGACTT
AAGGAAACCTCATAGTCTTAAGATACTTAAAATTTGTTCAAGAAGGAAAACTTTATATGGGTCCTATCATGCAATTTATCCAAATCCTTCCATCCTATGA
GCAGACAATCAACGAATTAAAAAAGGCAGACCTGCATCCATGCTCTTTTAAGGAGCAACCAAAAATTGCTTCCACCAAACTCCTTTCTTCTTTACTACAG
CCCTCTGGCTGATTTTTTTTCTACTGTTCGACAGATCATTTATAGTAATTGGAGTTGCATATATAACTGCAGATTGTCTTTGTGAGAATGACTCAACAAG
ACCATCAATCCTTTTTTGAGAGGTATAGACACTATCAGCAGAACTGTAGTCTATGGATATTAGATCAGCCAAAAATTCAGCAGGATTTATATGATCTGGA
CACTGG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA10G41110.1 Uncharacterized protein protein coding CNT0001119 1906 807 CDS Trans
GLYMA20G26160.1 Uncharacterized protein protein coding CNT0001119 2176 806 CDS Cis