Detailed information on CNT0001136 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9C9W5|HPR1_ARATH, E-value = 5e-25

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001136

Peptides detected in this lncRNA

>peptide 1 (41 aa)
LGGRCNVGYHNGILQLCKPGFHVGLFLINISISHRLKKWFL*

>peptide 2 (35 aa)
WRQMQCGVPQWHSSTLQARVSCRALPNKYFNFTQT*

>peptide 3 (40 aa)
MISGFIQDRMKTIYLPPGGPHPWLLPFSKSRGFHHLLSRM*

Sequence

>CNT0001136
CTTGGAGGCAGATGCAATGTGGGGTACCACAATGGCATTCTTCAACTCTGCAAGCCCGGGTTTCATGTAGGGCTCTTCCTAATAAATATTTCAATTTCAC
ACAGACTTAAAAAGTGGTTTTTGTAATATTGAATCCAATTATTAAGTGACAAAAGAAGGGTCAGTTACCTCAAACACGTCAAGGCCTACTCGAAACATCG
GGTTCTGTTTTAAATGCTCCACAAGTGCAGCTTCATCAATAACAGGTCCTCTACTGCAGTTTATAAGAATTGCTTCCTGTAATAGGGACAACAACATTAC
AGAAAACAATTTTCATCACTTGATTTTTGTAAATAATTGAGAGCAAAAACATGTTCCAATAAACTCTTACCTTCTTCATCTTAGCTAGTCTTTCCTTGTT
GACTAGATGATAAGTGGTTTTATCCAAGACAGGATGAAGACTATATATCTGCCTCCTGGAGGACCTCATCCATGGTTGCTGCCCTTTTCCAAGTCACGGG
GGTTTCACCACTTGCTTTCAAGAATGTAGCATAGGCTGCAATGGGTAAAAAAGAACCATTAGTTCACACTTCACAGTAATTTGGTTTATAAATAGGACTT
GGTAGGACCATGCCTGTGATAAACTTTTCTAGTCGTGTGGACTGGTAGAGATCATAGTAAATTAGGTTCATCTTGAACCCTTCAA

lncRNA-RNA interactions

Number of interactions: 9

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA10G24682.1 Uncharacterized protein protein coding CNT0001136 1117 439 CDS_UTR Trans
GLYMA10G42800.1 Peroxisomal hydroxypyruvate reductase; Uncharacterized protein protein coding CNT0001136 607 242 CDS Trans
GLYMA10G42800.1 Peroxisomal hydroxypyruvate reductase; Uncharacterized protein protein coding CNT0001136 735 454 CDS Trans
GLYMA10G42800.2 Peroxisomal hydroxypyruvate reductase; Uncharacterized protein protein coding CNT0001136 607 242 CDS Trans
GLYMA10G42800.2 Peroxisomal hydroxypyruvate reductase; Uncharacterized protein protein coding CNT0001136 735 454 CDS Trans
GLYMA20G24200.1 Putative NADH-dependent hydroxypyruvate reductase; Uncharacterized protein protein coding CNT0001136 688 242 CDS Cis
GLYMA20G24200.1 Putative NADH-dependent hydroxypyruvate reductase; Uncharacterized protein protein coding CNT0001136 1216 443 CDS Cis
GLYMA20G24200.2 Putative NADH-dependent hydroxypyruvate reductase; Uncharacterized protein protein coding CNT0001136 688 242 CDS Cis
GLYMA20G24200.2 Putative NADH-dependent hydroxypyruvate reductase; Uncharacterized protein protein coding CNT0001136 1216 443 CDS Cis