Detailed information on CNT0001138 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O14155|YE72_SCHPO, E-value = 4e-17

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0017654, E-value = 3e-08 (Z. mays)

Expression of CNT0001138

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MHSSAPWKHTLEGPDDMPAHIKSSMFGCTLAVPITNGKLNMGT*

>peptide 2 (42 aa)
MNTPVAEQFLKDSWPCMKSPQLPMFILCTGTFKELNQCFHCR*

>peptide 3 (40 aa)
MIFINIYIVTRCTQAHIYVETGGGGGLLLSAGIKSSVITN*

>peptide 4 (32 aa)
MLLNGGIFADCHRQFVKGGVLCLAVGRNVCLYG

>peptide 5 (50 aa)
LQPQLGPQHKVQHTSASLTINENYDSDVRDDTETFLNRIVPEVSFFLSPI*

>peptide 6 (38 aa)
CNRNWGRNIKCSTPVLLLPSMRITTPMFAMILKPSSIG*

>peptide 7 (32 aa)
MTCQLILNHRCLVVHSRCPLQMGSLTWAHSRY*

>peptide 8 (48 aa)
MHTSTHICRDWRGWGTPFKCWDKELCDNELIFVALLEFCESIHEHSCC*

Sequence

>CNT0001138
CTGCAACCGCAATTGGGGCCGCAACATAAAGTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTACGACTCCGATGTTCGCGATGATACTGAAA
CCTTCCTCAATCGGATAGTTCCTGAGGTTTCTTTCTTTCTATCACCAATTTGATGCATTCATCTGCTCCATGGAAGCATACTCTAGAGGGGCCAGATGAC
ATGCCAGCTCATATTAAATCATCGATGTTTGGTTGTACACTCGCGGTGCCCATTACAAATGGGAAGCTTAACATGGGCACATAGCAGGTATTAAAATTCA
TCTTTGCAATGATGTATCAAAAATGATCTTTATTAATATCTATATTGTTACTAGATGCACACAAGCACACATATATGTAGAGACTGGAGGGGGTGGGGGA
CTCCTTTTAAGTGCTGGGATAAAGAGCTCTGTGATAACGAATTAATTTTCGTTGCACTTTTGGAATTTTGTGAATCCATCCATGAACACTCCTGTTGCTG
AGCAATTCTTAAAAGATTCGTGGCCTTGCATGAAAAGTCCGCAGCTACCCATGTTTATTTTATGCACAGGCACATTCAAGGAGTTGAATCAATGCTTCCA
TTGTCGATAGTGTTCCAAAAGTAGTTGTCTCCAGCAATGTTGTTAAATGGTGGAATTTTTGCTGACTGCCATAGACAATTTGTGAAGGGAGGTGTGCTAT
GCCTTGCCGTAGGCCGCAATGTGTGTTTATATGGTGG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA09G37480.1 Uncharacterized protein protein coding CNT0001138 95 83 CDS Trans