Detailed information on CNT0001139 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P28759|SODF_SOYBN, E-value = 2e-74

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001139

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MVLKHELEILVASMHACAALLKAGRMSPLLYDVTIISSSDFPSSSVPTTCFFRFST*

>peptide 2 (43 aa)
MNQSLFQSVLEAPRMAFHLHLVSCTPRRSHGSIPALCITRLID*

>peptide 3 (28 aa)
MNSLVNMQTLGLITSGYGGGFSSNFALTF

>peptide 4 (37 aa)
MHVLRCLCPCIVSFLSFFIKTRLTKVSIECKFENYKS*

>peptide 5 (41 aa)
MCIRNIAPLENHNEFSCKHANSRSYYQWIWWRLQLELCIDFW

Sequence

>CNT0001139
CTTACGTAGTAACCTCCCCAAACAAGGGGGTTCACAGCATTGGGACTCTTGAGCACCACTAGCTTGTTGTCCTCATCGGGTGAAGGAGGATTTGCTACAT
TTTCCCCATCAAATTTTCTTGCTCTATCTATATTTCATCAAAAGAAAATGAATGAACAAAATGGGTATGTAACTGTCTGGATAAATTTCTCATGAAGTAC
TTATAAGTGAAGAACATAAGAAGGTAAAATGAAACAAACTCCTATTACAAGTTAAAATTAACTTATGCATAAATTAATTTGTAGAAGCTTTCTCGTTTAG
CTTTTCCAAAAAAGTTGACTGTAACTTGTGCATAAAGTAAGGTGGAAGGGGGTTATTACTGACATGCTAGCCAAGCCCACCCTGAACCAAATTGTGTTGC
AGCAGCAGCCTTGAACTCATCAAGGAATTTTACAAATGAACCAAAGTCTCTTTCAATCAGTTCTAGAAGCTCCCCGGATGGCTTTCCACCTCCACCTGGT
TTCATGCACTCCCAGAAGAAGTCATGGTTCCATACCTGCACTATGCATTACAAGATTGATTGATTAATTAAGTACTAAGCCATGGTTTTGAAACATGAAT
TAGAGATTCTGGTTGCAAGCATGCATGCCTGTGCTGCATTGTTGAAAGCTGGAAGAATGTCACCCTTATTGTATGATGTGACAATAATCTCTTCTAGTGA
CTTCCCATCAAGCTCTGTCCCAACAACTTGTTTTTTCAGATTTTCCACATAAGTCTTGTGGTGCTTCCCCCAGTGAAACTCAAGTGTCTGCTGGCTCATC
ACCGGCTCCAAACCATTCTGAAACATTGCATTATCACAATATATTTTTACAACTTTCTACTTTTGGTTTTTTTATTTTCTGGTAGGTTTGGTTTTATAAA
ATAGGATGAACAGCCGAACAGGTAACTTAATTTTTCTCCCTGGAAGCCTTGTGTGATTCTTATGAGTTTTGGGAATCTTCATCTATATATATGTGTGTGT
GTTTAGTTAGATTATAGCATCGGATCCATGATGAGCAGAAAATAAGAGTAACCAAAGTACTTAGTCCATGCATGTATTGAGATGCCTATGTCCATGTATC
GTTTCATTTTTAAGTTTCTTTATTAAAACAAGACTAACCAAAGTTTCAATAGAATGTAAATTTGAAAACTATAAAAGCTAAGTATTCTTTCTTCAATGTG
CATTAGAAATATAGCTCCACTAGAAAATCACAATGAATTCTCTTGTAAACATGCAAACTCTAGGTCTTATTACCAGTGGATATGGTGGCGGCTTCAGCTC
GAACTTTGCATTGACTTTTGG

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G09630.1 Superoxide dismutase protein coding CNT0001139 650 474 CDS Trans
GLYMA02G09630.2 Superoxide dismutase protein coding CNT0001139 650 474 CDS Trans
GLYMA02G09630.3 Superoxide dismutase protein coding CNT0001139 650 474 CDS Trans
GLYMA10G22680.2 Superoxide dismutase protein coding CNT0001139 617 476 CDS Trans
GLYMA10G22680.3 Superoxide dismutase protein coding CNT0001139 617 476 CDS Trans
GLYMA10G33710.1 Superoxide dismutase protein coding CNT0001139 385 244 CDS Trans
GLYMA10G33710.1 Superoxide dismutase protein coding CNT0001139 1671 850 CDS Trans
GLYMA10G33710.2 Superoxide dismutase protein coding CNT0001139 385 244 CDS Trans
GLYMA10G33710.2 Superoxide dismutase protein coding CNT0001139 1671 850 CDS Trans
GLYMA20G33880.2 Superoxide dismutase [Fe], chloroplastic protein coding CNT0001139 3622 1321 CDS Cis