Detailed information on CNT0001147 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8VYW1|PAPS4_ARATH, E-value = 8e-49

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0001147

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLLIKASKTVHQVFGTYMCIFDLIVCEYYIYFLNA*

>peptide 2 (46 aa)
MILGFLFGILEKNPCDRSHHMSIITPAYPYMNSSFNDSMSTLRVMM*

>peptide 3 (74 aa)
MLSTLSMIFSVIISKCFPNKVCIQIQGRVLVRQRIGKTLKISPLIYILAGFLILEIKTMQGAKVTSDHIMNLGN*

>peptide 4 (41 aa)
MLASRFFRVYTQWQWPTSVMLCPIEENDLGFPVWHPGKKSL*

>peptide 5 (40 aa)
IGLAYFHDKEAVDWIDLCTKFKGLDFTYSPLCTFFRLHFS*

>peptide 6 (29 aa)
MRLFDMLLYFYILFSTGYYFLKLARERTV*

>peptide 7 (30 aa)
MALIFQSISAYSGHYRPMDSGLTYVILKIS*

>peptide 8 (44 aa)
MEFLSFYSDKEIVDCKCDMPNLCELQMFDYQWHNGFDFSIYLSL*

>peptide 9 (34 aa)
MGRILILNNALDQSFKNSASSIWDLYVHLRFDCV*

>peptide 10 (32 aa)
MNTLSVWAKLSTSNMEICFTQMKILKMQNGYL*

Sequence

>CNT0001147
GATTGGATTAGCTTATTTTCATGATAAAGAAGCAGTTGATTGGATTGACTTATGTACTAAATTTAAAGGTTTAGATTTCACATATTCACCCCTATGTACA
TTCTTTAGGTTGCATTTTTCATAGCCATGTAGCAGAGAATCTGTCTGCTTAACCACAAGGTTATTCTCTTCATAGTGATCACTAGAGTTAGAAGCAGAGT
CATATCTCATCCCATCAAAACCATGCTTAGTACCCTTTCTATGATTTTTAGTGTTATTATAAGCAAATGCTTCCCCAATAAAGTATGCATTCAAATCCAA
GGAAGAGTTCTTGTAAGGCAAAGGATTGGTAAAACTTTGAAAATTTCTCCGTTGATCTATATCCTAGCGGGATTTCTTATCCTGGAAATCAAAACCATGC
AAGGAGCCAAAGTCACCTCTGACCATATTATGAATCTTGGGAATTGATTTTAGTAAAATATGAATCACATCTTTGCCAACAATACATGAGGAAAAAAGAG
TGAGAGGCTAGGAAATTAACAATTAAGCACTGATTTTAAAGAAACTACCACTCACCCTAAGCTTGTAAGTTGTAATATTTGATGAATCTTTACTACCTAA
ATGTCTTACTAAGTTTATTATATTCAGATTGAGTTGTGCTTGATGTTATCATGAGGTCAAAGAAGTTAAAAAATTAAATATTTTTATATTCCAAACTCAG
TGATTTGTATCATGCAAGTTTTGTAGTTTTTGTGTCATATTTTGGAACCTTTTCCTTTTCCATTCATGAATAGAACTTGGATATATCTGATGTCTTTGTT
CTACACAATGTTGATGAGCCTACCGTGTGAAGTTTGAATGGTTGTAAGGTTGTAGATCAAATTCTGAAGCTTGTTCCTAATGTTGAGCACTTTCTCACAA
CACTTTGTTGCTTGAAATTTTGGGCCAAAGGGCGAGGCATTTATTCTAATGTTTTCTTGGTGGTGTTAACTTGGCACTTCTTGTAGCTTGAGTGTGCCAG
TTTTATCTAAAACCAATTCCAAGTATGCTTGCTTCTAGATTCTTCAGGGTATATACACAGTGGCAATGGCCAACTTCTGTCATGTTATGTCCAATAGAGG
AGAATGATCTTGGGTTTCCTGTTTGGCATCCTGGAAAAAAATCCTTGTGACAGATCCCATCATATGTCAATCATTACCCCTGCCTATCCCTATATGAATT
CTAGTTTTAATGATTCTATGAGCACACTTCGTGTAATGATGTAGCAGTTTCAATATGGCAACAAAATTTGTGGGGAAATATAATTGAGTAAAGCTTGTTG
GAAGGCTCTGTTTGAAAAGTACAGTGTCTTTGAAAGCTATAAAAACTACTTGCAAGTTGATGCTGATGACTTGCACAATTGGAAAGGTTGGGTTTAGGAA
ATGGGAAGAATCTTGATCTTGAACAATGCTCTTGATCAAAGCTTCAAAAACAGTGCATCAAGTATTTGGGACCTATATGTGCATCTTCGATTTGATTGTG
TGTGAATATTATATATATTTTTTAAATGCATGAGGTTGTTTGACATGTTGCTCTATTTTTATATTCTTTTTTCTACTGGTTATTATTTTCTTAAATTAGC
AAGAGAGAGAACGGTATGAATACATTGAGCGTGTGGGCAAAATTATCGACTAGCAATATGGAGATTTGCTTCACACAAATGAAGATTCTGAAGATGCAAA
ATGGATATTTGTAATGAGCAAGAAACTTTATGTTGTCAAGGTAACAATTCAAGGGTAGTTACATTTTAAAGTTACTTATTTTCTTTAAAGACAATTACCA
TGTCTTTCTTGTACCACTATTACATTGCATTAATCTTGTAGAAAAAGAAACATTATTTCATCATTCTAGTGTTTTGGCTGGAGGAGCTACATTAGCTGCT
AGAAGGCTGGTGGAAGAGAATGGAATTCTTAAGCTTTTATAGTGACAAGGAGATAGTGGATTGCAAATGTGACATGCCTAATTTATGTGAATTGCAAATG
TTTGATTATCAATGGCACAATGGCTTTGATTTTTCAATCTATCTCAGCTTATAGTGGACATTATCGACCAATGGATAGTGGATTAACTTATGTAATTTTA
AAAATTTCATGAGCGAAGATTATGTAATAAAATTTTGGTTCATAGATAGAATCTTGAATCCTTGATTCACCATGGAACATCATAGAGTTGTTTGATCCAT
GCGAAAAACCTTGATAGAATCTTGGTAAATTAATAGATTTTTTATTCTTTTATCTCAAAGTGAAAAATGGG

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G44910.1 Uncharacterized protein protein coding CNT0001147 260 456 CDS Trans
GLYMA08G41330.1 Uncharacterized protein protein coding CNT0001147 1093 533 CDS Trans
GLYMA08G41330.2 Uncharacterized protein protein coding CNT0001147 1093 533 CDS Trans
GLYMA08G41330.3 Uncharacterized protein protein coding CNT0001147 1093 533 CDS Trans
GLYMA08G41330.4 Uncharacterized protein protein coding CNT0001147 1093 533 CDS Trans
GLYMA14G03850.1 Uncharacterized protein protein coding CNT0001147 312 456 CDS Trans