Detailed information on CNT0001149 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001149

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)5.61111.74530000.2290.858000000.6690leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)012345678910111213

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MAFFLILSSWSSTFSTTFCRTNIIELLGSIVIIISKHERSKT*

>peptide 2 (31 aa)
MNVPKLDSLNGKRKKNKKVESKQGCNLNTKT*

Sequence

>CNT0001149
ATTATTGGATGCTGAGATTCCATACCTGAAATACCAGATACTGCCTTCATGGCCTTTTTCTTGATTTTGTCATCATGGAGTTCCACCTTTAGCACCACTT
TCTGTCGGACAAATATTATTGAACTTTTAGGATCTATAGTAATAATCATTTCTAAGCATGAACGTTCCAAAACTTGATTCCTTGAACGGTAAAAGGAAAA
AGAATAAAAAGGTTGAAAGCAAGCAAGGTTGTAATTTGAACACTAAAACTTGATCTCAAATTTCATCAAATTGTACTTAACTAGAAAAAGGAGTATAATT
CAAGCTTGGAAGCAGAGCAAATCTCAAAAAAATTTATAAATAGATTTATATGGTTCTTAAGGAGACAAAACTTGAAAGAGGGTACAAAGTCTTACCTTCA
TATTGATTCGAAGTTGGGAGTTTTCTAAGAAAAATCAAAAAGGGGAAGGGAGAATCTGAATGAATTTGAGATAGGGTTAAGAGATTGTTCTAATTGAACT
GTTAGTAGAACTTGAAGCACACGGTACTTATATACTAACACAATAGATGCTACAATAAAGACGAAGTCAACTGAAGTCAACTGAAGTCAATGCCAATATT
AAGTCTTTG

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA09G24170.1 Uncharacterized protein protein coding CNT0001149 1326 500 UTR5 Cis
GLYMA09G24170.2 Uncharacterized protein protein coding CNT0001149 1476 556 CDS_UTR Cis
GLYMA09G24270.1 Uncharacterized protein protein coding CNT0001149 1224 505 CDS_UTR Trans
GLYMA16G29650.1 Uncharacterized protein protein coding CNT0001149 415 255 CDS Trans
GLYMA16G29650.2 Uncharacterized protein protein coding CNT0001149 415 255 UTR5 Trans