Detailed information on CNT0001152 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001152

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPRPLPLPLTRIIFNIFLKEDLWSHHKLILQS

Sequence

>CNT0001152
ATTAGAGCAAGTTCTCCAAAGCATGAAAGTTTTTCAGCTGTGTAGTGCTGCAAAACCCTAGGTGCCTCCCCATCTTTTTCTTCCTGCCATTGAAATAAAT
GTTGAGCAAGAATTGTAACACGTCTCATTGACAATACAGAAACAAACCAAAATATCAGAAAAGAGTCAAAAGACCAGGTACAAGCAGCATTCATTATCTT
GAAACATGATTTCAACTTGACTATACCAAAGGCAAAGCCAATTATAAGAGCTGAAGTGGTGGACTGGGGTTTAAAAATAACAAAAAGCTGGTTTTCAAAA
GAGGTCAAATCTTGGGAACCAACTTTATCACAAATGAAAAATTACTGGCTTGGAAAGTTGAGAAGAAATATTTATAGAAGTTTTTGAAGCCTGCAGATGC
CACGACCCTTGCCTTTGCCTCTGACTAGGATAATTTTCAACATTTTCCTAAAAGAAGATCTGTGGAGCCATCACAAATTGATACTGCAATCAAA

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G34840.1 Uncharacterized protein protein coding CNT0001152 972 506 CDS Trans
GLYMA09G32680.2 Uncharacterized protein protein coding CNT0001152 1354 494 CDS Cis
GLYMA09G32680.3 Uncharacterized protein protein coding CNT0001152 1354 494 CDS Cis
GLYMA09G32680.4 Uncharacterized protein protein coding CNT0001152 1354 494 CDS Cis
GLYMA09G32680.5 Uncharacterized protein protein coding CNT0001152 1354 494 CDS Cis