Detailed information on CNT0001171 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001171

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MMTKFLRIEDFLMDGTLVSSNNLTSKRVSYPVSTTG

>peptide 2 (69 aa)
MTFEWTTCLLLYNQSSLTFPKRSISSSLFSFHSSIIIGFSLNQFSNMSSTVSPSETFQKNYDISQMASS*

>peptide 3 (32 aa)
YQRVKLTQFPDHIIFQVVTPASSLSKASAKRL*

>peptide 4 (35 aa)
MPLLNQEIQNNGLGSVWFEKCCFHCFLYNFLKLEN*

Sequence

>CNT0001171
TACCAAAGAGTAAAACTAACCCAGTTCCCAGACCATATAATCTTTCAGGTAGTCACTCCAGCAAGCTCTCTTAGTAAAGCATCAGCAAAGCGGCTCTGAA
ACCAGAGCAGGGATAGGAAAAGTGAGTAGAGAATGCAAAGGGATAAAGGCATGGCAATATGAAATTGTAAACTATGCCTTTATTGAACCAGGAGATTCAA
AACAATGGCTTAGGATCTGTTTGGTTTGAGAAATGTTGTTTTCATTGTTTCCTGTACAATTTTTTGAAATTAGAAAACTAAGTGAAAATAAGGTGACATT
TTTGTAATTCTCTATAGAAACAAGAAATGAAAACCAAAACATTTCTCAAATCAAACAAGCCCTTCTTTTTCTTCCCTCCCATTCATTTTCCTTGGTATTG
AAAGTAAAAGGTCAGACCTGTTTTGTGGTGACAATGTACACTTTCGAGCTTGCAAATCTTAATGTATCAGCAGTACCAGGATAGAGTCTAGAGGTAAAGC
ATTCACAAATTAGCCACCAGGATATATCTATTCAATCAGCAGGTGCTAAACAACAGCAAGAACTCAAGTGTTTATATAGCAAAACTATCCACTTTTAATG
TAAGCAAGAGCTCAGCTCTTCTTGCACTTGCAGCAACATTTTTAATTTGAACATCTATGCTCAATGCTATCACTAACTCAGTTATTGCTTTAAGTTTTTC
ATAATTCATCTCATCAGGTATAAGTACTAAAAAAAACGTGATCCTATTTCATGACATTTGAGTGGACTACCTGTTTGCTGCTATACAACCAGTCATCTCT
GACCTTCCCAAAAAGGTCTATCAGTTCTTCTCTATTCTCATTCCATTCTTCCATAATAATAGGCTTCAGTTTGAACCAGTTTTCCAATATGTCCTCAACT
GTGAGCCCCTCTGAAACCTTTCAGAAGAACTATGACATCAGTCAAATGGCATCATCATAGATGATGACAAAGTTCCTTAGAATCGAAGACTTCCTGATGG
ATGGAACTCTAGTCTCAAGCAACAACCTCACAAGTAAAAGAGTTTCATATCCAGTTTCCACCACTGGCC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA09G39430.2 Uncharacterized protein protein coding CNT0001171 1258 463 CDS Cis
GLYMA09G39441.1 Uncharacterized protein protein coding CNT0001171 308 160 CDS Trans