Detailed information on CNT0001173 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001173

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.3761.1043.00816.0440.6560.5490.6450.6054.2673.5923.1264.0545.71316.9828.646leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0123456789101112131415161718

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MAALDKEVKSLVEDNWKFEGPRSRIHLVSHRGGHLYRPTEISKNWNLTPPK*

>peptide 2 (49 aa)
MKIANEGSFYARLLVTFSASLSNWVEKLVFLTFMWYYCSYFEGSMINCR*

>peptide 3 (32 aa)
NNEGERQIFGLRRMQHLSIFKIRSHGCTRQGS*

Sequence

>CNT0001173
AAACAATGAAGGGGAAAGGCAAATCTTTGGTTTAAGAAGAATGCAGCATCTTTCTATTTTTAAAATCAGATCTCATGGCTGCACTCGACAAGGAAGTTAA
ATCCTTGGTTGAAGATAACTGGAAGTTTGAAGGGCCTCGTTCGCGGATCCACCTAGTATCACATCGAGGTGGTCATCTCTATAGGCCAACAGAAATTTCT
AAGAATTGGAATTTGACTCCACCAAAATAGTTGGAACACTCACCTTGTAACACTGTGCCTCTATTATAAAGTGATTATGGTTGTGATCTGCAGATAAGAA
CTGCTATGCCAATTTCTTTCCCCCGTGGTAGAAAACACAGCTGTTAGTTGTTACTCTACATCTTCAGGTGACATGACATGTAGTTCTGTAAGGGCATGAA
GATTGCAAATGAAGGTTCTTTCTATGCAAGATTGTTAGTCACATTTTCTGCTAGTCTTTCTAACTGGGTCGAGAAGCTGGTGTTTTTAACATTTATGTGG
TATTATTGCTCTTATTTCGAGGGATCAATGATTAATTGCCGTTGATTGTTCGTAAAACTATCTATCTATACAGAGGGATTAAATTACATCGTTATACCTA
AAGAGCTATTACATCATATGTATAAAAGTAAACTTCACTTAAAACTTT