Detailed information on CNT0001180 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001180

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.7651.6741.710.7020.6120.1920.6020.4231.4140.6280.9571.9411.0320.441.068leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.71.81.922.1

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRHYQNGSPLLSSNMLNDQDQLRELENAVVKETEAKMNYRKRVVVEHTNDNR*

Sequence

>CNT0001180
GTGAAAATGGCCATTATACCTCTTGATTTTATATTCTTATTTTTTGCTTCTATGAAGGTTTTCTTGCTCTCCTTCTCTTAAATACTATTACATCAGATTA
TATTGCTTTGCCATGCTGTACTACATGATCCTAGTGAAATATCATTATCCTAAATAAAACTCTAGTAGATCTCCAAATTATTAGTGCCACCCTCAATTTA
TTTGGGAAAGTTTAAACTTTTTAATACCCCTCAGATGTTTTTCATGGAGGAAGAGATGTGCGTGTGCCTATTGCTAAAGATGTAGCATACCTACAACCCA
ATGTTTCTTTTGTATAATTGTGTTTTAATAAGCGAAATTTTCCCAATTGTTTTACTGCAGGAGATATGGTGCATACCTTATTAGGTTTGGAATTCTAAAC
ATATTACAATAGGTTGGAAGAAGAGATCGAGAAATGGCAGAATCTGTTCTTAAGGATGAGACACTACCAGAATGGTTCTCCTTTGCTATCTTCGAATATG
CTGAATGACCAAGATCAGTTAAGGGAGTTGGAAAATGCAGTTGTCAAAGAAACTGAAGCTAAAATGAACTACAGAAAAAGGGTAGTTGTTGAGCATACAA
ATGATAACAGATAGTATGGAAGGACCTGAACCCAGAATTTGTTCTCCAGTAATATATTTTTGTAAAATCCTGAGCTGGGGGTAATTGTAATTCTACTGTT
TTAATAACTTCTTATTCTGGTTTCCTTGTTTAAAAAAGAAAACATAAAGTTGAGATTCGACCACGAGGGTTGAAAATTTAGACACGATTTTTCTGTATTG
AATTTACTTTCTTTCTTATTTCTACCTGCTGGTAGATGTGTTGATTTCATTGTTCAATGTAAATGTAATGTTAGAGTACTTAACATGGACAACAATTGCT
AATATTATCCAACACTGGGATCAGAA