Detailed information on CNT0001187 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001187

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.6030.3220.74101.7241.9252.1661.5890.590.7870.8561.2151.0500.223leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.4

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MVCNVASLLPGRHFSPFLASLLGLCSLTYLAPNAESWKNLFFQLNFLVVLLEVV*

>peptide 2 (49 aa)
IIKLILFDSITQKIYEKNTLSDSINQIVSFICCNQLECEPWRNSKVAFW*

>peptide 3 (53 aa)
MKKIHYLILLIKLSVLYVAISLSASLGATVKLHFGDWLVMDSNPEADSLHMQR*

>peptide 4 (29 aa)
MPKRNLVWCFCKMKILSPQLSTTYNTSEK*

Sequence

>CNT0001187
GATAATCAAATTGATTCTATTTGATTCAATTACACAAAAAATATATGAAAAAAATACATTATCTGATTCTATTAATCAAATTGTCAGTTTTATATGTTGC
AATCAGCTTGAGTGCGAGCCTTGGCGCAACAGTAAAGTTGCATTTTGGTGACTGGTTGGTCATGGATTCGAATCCGGAAGCAGATTCTTTACATATGCAA
AGGTAAGGTTGTGTACAATGACCCTCCTCCATACCTTTGCATAGCAAGGAGCCTTCTGGCACTAGGATACGTTAGTTTATATGTTGAAATTCACTTCTCA
TCTTTTTCTCTCAGAAGGAAACAGCTCAATTACGGAAGTAAATATGGCGTAGACATATAATGGCATAGGATATATTATTCTGAAGAACTTTGATAATTGA
CCCAAACTTTTATACTTCTAGCATACTAGTCTATAAGGAAGCTTCAATCAACATGTAACTAAGTAAGATAATGCCAAAAAGAAATCTTGTTTGGTGTTTT
TGCAAAATGAAAATACTGAGCCCCCAGCTCTCCACAACATACAATACATCTGAGAAATAGTATCTTAAAGTCTTCCTTGTTTGTTTGTTTCTATCTTTTT
GGGCTTTTCTGAATGTATGACAGATTTCATCTTCACCAATGATAAGTGATGGTCAAAGCTTTTACTGAAAGACAATAATTATCCAAAATGCTTCTAAATA
TACATTTATACCTTTTCCACATTTTCTATTTTTGAGAAATCCAATCTTCTAGACTTTCCACAATAGCCCCTTACACTTTTACTATTAGTTATTATACAAA
CTCCGGAACTTCAAAAGAATAACATTTGTTATCAAAGTGAAACGCTGAATCCAGCTTTTGTGGTGAATCCCCCTGAAGAATACAACCATTTCCTCTCCTT
TCTCTTCCTTTATGCTTACAGAACCTTGCTTGGAGATGAATAGTTTGTAAGGATGGTTATCTGAAAGTTTCTAATGCATCTTTACTAAAACTGTAAAATG
TGGATGTTGTCAGCAATTTTATTTCTTCTCTTCCTCTTGATATGTTTTATCGACTACTTTGGATTTATTTCTGCCATCTGAATATGTCTGTTCAGTATAT
TTAAGGTGCTCAATTCTTTCAACTGCACCATGTCCTTAGGTGATACATAATTAAGCAAGTTAATTTACTCTCAACTTTTTCCAATACATGGTGTGTAATG
TTGCTAGTCTCTTACCAGGGAGGCACTTTTCACCCTTTCTTGCAAGTCTGCTGGGTCTATGTTCTTTGACTTATCTTGCTCCAAATGCTGAGTCTTGGAA
GAATCTCTTCTTTCAATTGAACTTTCTTGTTGTTTTGTTGGAGGTGGTTTAATCTGAGGTCTCTTATCCTGTTTTAAGACAAGTTCATGTGAACTCAATT
TGTTGAAGAGTTTTCATTTTTCAATAATATGCTGATGATGCTGTAAAAGCACTGCACTGCTATACCTGATCCAATCCAC

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA09G07081.1 Uncharacterized protein protein coding CNT0001187 1394 514 CDS Cis
GLYMA09G07081.2 Uncharacterized protein protein coding CNT0001187 1394 514 CDS Cis
GLYMA10G43457.1 Uncharacterized protein protein coding CNT0001187 247 173 CDS Trans
GLYMA11G08975.1 Uncharacterized protein protein coding CNT0001187 297 162 CDS Trans
GLYMA15G18370.1 Uncharacterized protein protein coding CNT0001187 722 421 CDS Trans
GLYMA16G23930.2 Uncharacterized protein protein coding CNT0001187 299 162 CDS Trans