Detailed information on CNT0001188 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001188

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.0931.3063.43100.8872.5060.4362.0441.5941.0931.7831.5152.24200leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.53.75

Peptides detected in this lncRNA

>peptide 1 (49 aa)
IIKLILFDSITQKIYEKNTLSDSINQIVSFICCNQLECEPWRNSKVAFW*

>peptide 2 (79 aa)
MKKIHYLILLIKLSVLYVAISLSASLGATVKLHFGDWLVMDSNPEADSLHMQSFRFFAVSGTSRTSRLGICFVLMLYLW*

Sequence

>CNT0001188
AGATAATCAAATTGATTCTATTTGATTCAATTACACAAAAAATATATGAAAAAAATACATTATCTGATTCTATTAATCAAATTGTCAGTTTTATATGTTG
CAATCAGCTTGAGTGCGAGCCTTGGCGCAACAGTAAAGTTGCATTTTGGTGACTGGTTGGTCATGGATTCGAATCCGGAAGCAGATTCTTTACATATGCA
AAGTTTCAGATTCTTTGCCGTCTCCGGAACCAGCAGGACCTCGCGATTGGGGATCTGCTTCGTGTTGATGTTGTATCTTTGGTGATTCTTGAGAAGATGG
AGCACTTAAAACATCAGGAAAAAGCCTTTGAGGAAATGTAGTAGGACCGCATTCATAACTATTAAGTTTTTGTATGTTTTACTCATCATTAACCCCTCTT
ATTAATGTATTTCTGCTTTAATTTTTCATTGCTTCTTTAATCAGTTAAGTAAGATCAAACCTGAGACCTCATCATTTCTGCGGAAGGGCAATGCAGCATT
TCCAATCACGGTTCTACTATCGCTTTCTTCACCTCTTCTACTGGAACTAAGAAGCTCATCATGTTTTTTCTTTAATGCAGATTGTCTCTGCAAAAGTTAT
AAGATATGAGAAGTTAATGTGGAAGAACTAATAACCACA

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA09G07081.1 Uncharacterized protein protein coding CNT0001188 1206 438 CDS Cis
GLYMA09G07081.2 Uncharacterized protein protein coding CNT0001188 1206 438 CDS Cis
GLYMA15G18370.1 Uncharacterized protein protein coding CNT0001188 700 435 CDS_UTR Trans
GLYMA16G23930.2 Uncharacterized protein protein coding CNT0001188 170 91 CDS Trans