Detailed information on CNT0001190 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q6AUV1|XDH_ORYSJ, E-value = 2e-16

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001190

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.9711.7261.4690.78400000000.16700.9830.795leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.71.81.922.1

Peptides detected in this lncRNA

>peptide 1 (102 aa)
MVLSEAVSLLSPFFDEVTTVSAYFGEISWKGYLRLLLSFIIANGLHKITCRCSGSSLYRWNYFSYPWGCRNGARFAYQSCPNCCFSFSYPSLFNERSSNQ
SI*

>peptide 2 (79 aa)
MVCTKLLAGALVQVYTDGTILVTHGGVEMGQGLHTKVAQIAASAFHIPLCSMKEVLINLFKVFIPNQDHTSSPIKTYMG*

>peptide 3 (49 aa)
KRCLLSLHHFFHANTTLTVTSLFTIPLFMWRHDGGRRTRSFLVRSFPHS*

>peptide 4 (106 aa)
ETLPPLTPSFLSRKHHTHCNFLVHDSIVHVEARRRATDAVFSGAIFPSLLSLLSPFSDTVFSGTVSLQSSLSLSWYCPRRFHFSHHFLTRSPLFLHISVR
YLGRDT*

Sequence

>CNT0001190
GGAAACGCTGCCTCCTCTCACTCCATCATTTCTTTCACGCAAACACCACACTCACTGTAACTTCCTTGTTCACGATTCCATTGTTCATGTGGAGGCACGA
CGGAGGGCGACGGACGCGGTCTTTTCTGGTGCGATCTTTCCCTCACTCCTGAGTCTTCTCTCTCCTTTTTCTGATACGGTCTTTTCTGGCACGGTCTCTC
TACAGTCTTCACTCTCCCTTTCATGGTATTGTCCGAGGCGGTTTCACTTCTCTCACCATTTTTTGACGAGGTCACCACTGTTTCTGCATATTTCGGTGAG
ATATCTTGGAAGGGATACTTAAGGCTGTTATTAAGCTTCATCATCGCCAATGGTTTGCACAAAATTACTTGCAGGTGCTCTGGTTCAAGTCTATACAGAT
GGAACTATTTTAGTTACCCATGGGGGTGTCGAAATGGGGCAAGGTTTGCATACCAAAGTTGCCCAAATTGCTGCTTCAGCTTTTCATATCCCTCTTTGTT
CAATGAAAGAAGTTCTAATCAATCTATTTAAAGTGTTCATACCCAATCAAGATCACACAAGTAGTCCAATTAAAACTTATATGGGATAGCAAATGGATAT
TTATTATTTACTTAAATGGCTAGTATACCTCACAGTCTCACACCTGATAAAATGACCTAAAAAATGATACTTTCAACTTCAAAAAAGATAGCTCAGCTTC
CTTCATGTATATGCATATCTTCTCTCTATACAATTTAACATTTCTCATCTCAATGAACATGCAGAACACGGTTTAGCTTCTACCATTATATTTTTTTAAG
TCAGCTTTTAATAAATAAATAAAGACTTC