Detailed information on CNT0001191 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SZN7|HIP26_ARATH, E-value = 3e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001191

Peptides detected in this lncRNA

>peptide 1 (41 aa)
LFLLFFSYKEYVLFTKETVINKCTSPSLTRPTSHNLSVSHN*

Sequence

>CNT0001191
CCTGTTTTTGTTGTTCTTTTCTTATAAGGAGTATGTACTTTTCACAAAAGAAACAGTCATAAATAAATGTACTTCCCCATCTTTAACAAGACCTACTTCT
CATAATCTCTCAGTGTCACATAATTAAGTTTGTGGAACTGTATTAAATGACTCTTTTGTGTCACAAAATTATGCTACTGTTCAAAAGATGATCAAATCTT
GGTGTATGAAATTGTTGTTTATCGAGTTGAAAACAAAATTAATTAGTTTACTACTCCTACAATAGAAGGTTTTATTATCAGCAAATGTTAGTCTGAAAAC
AGACCTTGGTCTATTCATCTTTCATTTGTAATTCCTACAATAAGAAGATTAAAATAGTTTGGTTTATTATTCCATTTCTGGCTATAAAAATGACCAAACC
TTGGTGGTGTATGAAAATATGAGAGAATAATAAAAGGACATAGATAGGACACCTTTCATGTGGACAACGGAATTTCTAACTCTTCTTTCACAGCCATCAC
AGTCCATTTTCACTTTGATTTCCACTGTCTGTAAG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA09G21200.1 Uncharacterized protein protein coding CNT0001191 876 333 CDS Cis