Detailed information on CNT0001192 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001192

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0001.4160000000008.884.128leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.588.599.5

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MDKIPAIKFCCLGCIKAKNFGGSIGFIFFLESFCYGEEYVSNAKKFLRRGKLFINSSSVSKSMCGVNQNLFLCCVHYVLWPAPL*

>peptide 2 (52 aa)
METTYVASWGRLQEVFIKEKKTICRGKMCGFQIRLKRLCVYHPTIMWIKDFL*

>peptide 3 (49 aa)
MRNTKKVQNGQDSRNQVLLFRMYQSEKFWWIHRVHIFLGKFLLWGRICF*

Sequence

>CNT0001192
CCATAATCGATTATATTATATTTATTATAAAGAGAATCGTTTTGAGTTCAGATCTGTTTGGCTTTGGTCCATAATTTGATTTTATCTCCGATTGTGAACC
AGTGTGATGGAAACCACATATGTCGCATCCTGGGGAAGACTTCAAGAAGTATTCATAAAAGAAAAGAAAACTATCTGCCGGGGAAAAATGTGTGGATTTC
AGATTCGACTGAAGAGGCTTTGCGTGTATCATCCAACTATCATGTGGATCAAAGATTTTTTATGAGATTAGTAGTTGTAAAAGCACCAAAGTGGCTTGGG
GTTCGGTAGGGTTCTGAGTTCCGAGTTAAAATTAAAGCCAAAACAAATATTGAGCAAGGCGCCGAACTTGGTGAAATCCCTGTTTAGTGATGAGGAACAC
AAAGAAAGTGCAGAATGGACAAGATTCCCGCAATCAAGTTTTGCTGTTTAGGATGTATCAAAGCGAAAAATTTTGGTGGATCCATCGGGTTCATATTTTT
CTTGGAAAGTTTCTGCTATGGGGAAGAATATGTTTCTAATGCAAAGAAATTCTTAAGAAGAGGTAAGCTTTTCATTAATAGTAGTTCTGTAAGCAAAAGC
ATGTGTGGAGTGAATCAAAATTTGTTTTTGTGTTGTGTCCATTATGTGCTGTGGCCCGCACCCTTGTAGTTACTGATAAAATCTATGAAAACTGTCAATG
CTGACCATTAACCATTAATGTATATATAACGATAAGGTGATGCAATAGTTAATGATTGTTAAGATACTCAAATGTTACTTAATGAGAGATTAAAAATCCT
TTAAATATGCTGAGATATTTAAATTGAATGGTACGTTTGTCTAAACTTAATGAGAGATTAAAAATCCATTAACCATTAATTTTTTTTTGTTTGAAATTTT
GTTTAAGCCATATGTCAA