Detailed information on CNT0001205 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9UBS8|RNF14_HUMAN, E-value = 1e-09

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001205

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.8991.0820.55300.21400.2110.19800.5280.1920.2090.5423.0830.499leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.25

Peptides detected in this lncRNA

>peptide 1 (29 aa)
YLMLNSHCNVMLLHYENLFIGVFQKLVTK*

>peptide 2 (35 aa)
MKRSKKCSVRKKFIVIPSCALNVTWQFLELKVVTK*

>peptide 3 (34 aa)
MAISRTEGCNKMKCGNCEQYFCYRCNKVIDASEP*

>peptide 4 (31 aa)
MDFGERTKVDVVGGRRLFAESDVIVLQNYYL*

>peptide 5 (37 aa)
MWSGEGDYLLNLMSLFYKITIYKCFFLFFLLALKIISP

Sequence

>CNT0001205
CGTACCTAATGCTTAATAGTCACTGCAACGTAATGCTGCTACACTATGAAAATCTGTTCATTGGTGTATTTCAAAAGTTAGTGACCAAATGATTTTGGCT
TTTGTCTGCTTAAAGATGATACTGATAATACAACAGGAAAGAGGATGATAAACACTAGACAAAAAAAGCTGGAGATTTCATTCTCTACTTAAAGATGTCA
TTGGGCTAATTGGGTCTCATTTTCCTGCTTGCATTGATTTCATCCCAAGGACAAGAATGCAAGAGCTATTTCTCTGGACTGTCAAAAATCGTCTCAACTA
AAGGAAGATCAAAAGCGAAGGGAACATGAAAAGATCGAAGAAATGCTCAGTACGAAAGAAATTCATCGTGATTCCAAGCTGTGCCCTTAATGTGACATGG
CAATTTCTCGAACTGAAGGTTGTAACAAAATGAAATGTGGTAATTGTGAACAATACTTCTGTTACCGCTGCAACAAAGTAATTGATGCATCAGAACCATA
AGTACATTTCAGGTGCAGATGGATTTCGGGGAAAGAACTAAGGTTGATGTGGTCGGGGGAAGGAGATTATTTGCTGAATCTGATGTCATTGTTCTACAAA
ATTACTATTTATAAATGTTTTTTCCTTTTCTTCCTGTTGGCACTAAAAATAATTAGCCCAA