Detailed information on CNT0001209 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|B2X050|MNR1_CAPAN, E-value = 8e-16

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001209

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MASWPLSSYLAVSTTLITFESKTLTVSNPIPLFALVTTAYL*

Sequence

>CNT0001209
CTGGCTCTTAACAAAGTCAACTAATGAAGCAATACTAGCAGAGTCAGTGACATCAAGCTGGTGATAAATCACCAAATTAGAAAGACCACACTCTTTCAGT
CTCTCAATGGCTTCATGGCCTTTGTCCTCATATCTGGCTGTGAGCACCACCTTGATTACATTTGAGTCCAAAACTTTAACAGTCTCTAATCCTATCCCTT
TGTTCGCCCTGGTAACAACGGCATACCTTTAAGAACAAACTATTAGGAATAAGAGGTGGACAATGAATGAAGAAAAAGGAAGCTTGGGAGCTTGAAGATT
GAGAATACTCAAAAGGAATAAAATTGATAAGATGATAATTATACAATGGAGGCTCTTATTTATAGAACTAATTGGATTAACCATTCCTAACTGACTCACT
TATTTTCTATAACCTGTTACAAGCACATAAAAGAAGAAGAAAGCGTGGTCTAAACTCTAAAGTGGTCTAGTACAAAACTTAGTTTTGCCTCTGCCATAGA
TATGCTGAAACTCAATGGATTTGTGATGGAGGAGATAGATAAC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA09G39850.2 Uncharacterized protein protein coding CNT0001209 127 77 CDS Trans
GLYMA09G39861.1 Uncharacterized protein protein coding CNT0001209 419 209 CDS Trans