Detailed information on CNT0001217 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9C6I8|NOG1_ARATH, E-value = 2e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0017143, E-value = 8e-22 (S. tuberosum)

Expression of CNT0001217

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.2990.1200.6540.1430000.2930.1170.2550.1390.24100leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.550.60.650.7

Peptides detected in this lncRNA

>peptide 1 (29 aa)
YFFFPLSQCAASNKTEFTRQTLEPNVFQG*

>peptide 2 (195 aa)
MVQYNLKKITVVPNGKDVVDIILSRTQRQTPTVVHKWFMFLIFFFYYDANEYFYYQKKMKLPLLVAMILPKIRFRMILSDLNPFGKLYQEKLWWQHHQLV
ASISPSKGIYILCIGIICSRFLLFQTIRFSSGQWNSQSTLPTNQSLIWYKIIFRNIMSLCTYLVPFVGLWSVPFPVYSTVKLRECYYGKNDFAVN*

>peptide 3 (32 aa)
MLLHSMKGLYYFIFFLSFGWCVMGSVTKWGED*

>peptide 4 (39 aa)
LLLLSFESVCRLQQNRVHKTNPRTERFSGLIEHDGSVQS*

Sequence

>CNT0001217
CCTACTTCTTCTTTCCTTTGAGTCAGTGTGCCGCCTCCAACAAAACAGAGTTCACAAGACAAACCCTCGAACCGAACGTTTTTCAGGGTTGATAGAACAC
GATGGTTCAGTACAATCTTAAGAAGATTACCGTTGTGCCAAATGGGAAGGACGTGGTCGACATCATCCTCTCTCGCACCCAGCGTCAAACACCAACCGTT
GTGCACAAATGGTTCATGTTTTTGATATTTTTTTTTTATTATGATGCAAATGAATATTTTTACTATCAGAAAAAGATGAAATTGCCACTTCTTGTGGCAA
TGATTCTTCCAAAAATCCGCTTTCGAATGATTTTATCCGATTTAAACCCTTTTGGAAAATTATACCAAGAAAAGCTCTGGTGGCAACATCATCAATTAGT
AGCTAGTATTTCTCCCTCTAAGGGAATTTATATTTTATGTATTGGAATAATTTGTTCTCGTTTTCTTCTGTTCCAGACAATCAGATTTAGTTCTGGACAG
TGGAATTCACAATCTACCTTACCTACAAATCAATCCTTGATTTGGTACAAGATAATCTTTAGGAACATAATGTCTCTTTGCACTTATTTGGTTCCCTTTG
TTGGTTTATGGAGTGTTCCATTTCCTGTTTACTCAACTGTAAAATTAAGGGAATGCTATTATGGGAAAAATGATTTTGCTGTAAACTGATGGTAATACAT
GATGTATTAGACAAACTTTGTTGCTCCCTCGGGAAGTAATCCACTTGCAATTGACTTCACGGGGATGGGAAAATGACAAACTTTCTTGCAACTTTTGCCC
TTTTTTTTCTTTTGAATTTTTTCTAACCATCGTGAATTATTATTTGTTTCATAAATCTCAGATAATTTGATTTCTTGCATACTTGATGCTTTTGCACTCT
ATGAAGGGATTATACTATTTTATCTTTTTCTTAAGCTTTGGTTGGTGCGTGATGGGATCAGTGACAAAGTGGGGAGAAGACTGAAAATAAACC