Detailed information on CNT0001217 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9C6I8|NOG1_ARATH, E-value = 2e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0017143, E-value = 8e-22 (S. tuberosum)

Expression of CNT0001217

Peptides detected in this lncRNA

>peptide 1 (29 aa)
YFFFPLSQCAASNKTEFTRQTLEPNVFQG*

>peptide 2 (195 aa)
MVQYNLKKITVVPNGKDVVDIILSRTQRQTPTVVHKWFMFLIFFFYYDANEYFYYQKKMKLPLLVAMILPKIRFRMILSDLNPFGKLYQEKLWWQHHQLV
ASISPSKGIYILCIGIICSRFLLFQTIRFSSGQWNSQSTLPTNQSLIWYKIIFRNIMSLCTYLVPFVGLWSVPFPVYSTVKLRECYYGKNDFAVN*

>peptide 3 (32 aa)
MLLHSMKGLYYFIFFLSFGWCVMGSVTKWGED*

>peptide 4 (39 aa)
LLLLSFESVCRLQQNRVHKTNPRTERFSGLIEHDGSVQS*

Sequence

>CNT0001217
CCTACTTCTTCTTTCCTTTGAGTCAGTGTGCCGCCTCCAACAAAACAGAGTTCACAAGACAAACCCTCGAACCGAACGTTTTTCAGGGTTGATAGAACAC
GATGGTTCAGTACAATCTTAAGAAGATTACCGTTGTGCCAAATGGGAAGGACGTGGTCGACATCATCCTCTCTCGCACCCAGCGTCAAACACCAACCGTT
GTGCACAAATGGTTCATGTTTTTGATATTTTTTTTTTATTATGATGCAAATGAATATTTTTACTATCAGAAAAAGATGAAATTGCCACTTCTTGTGGCAA
TGATTCTTCCAAAAATCCGCTTTCGAATGATTTTATCCGATTTAAACCCTTTTGGAAAATTATACCAAGAAAAGCTCTGGTGGCAACATCATCAATTAGT
AGCTAGTATTTCTCCCTCTAAGGGAATTTATATTTTATGTATTGGAATAATTTGTTCTCGTTTTCTTCTGTTCCAGACAATCAGATTTAGTTCTGGACAG
TGGAATTCACAATCTACCTTACCTACAAATCAATCCTTGATTTGGTACAAGATAATCTTTAGGAACATAATGTCTCTTTGCACTTATTTGGTTCCCTTTG
TTGGTTTATGGAGTGTTCCATTTCCTGTTTACTCAACTGTAAAATTAAGGGAATGCTATTATGGGAAAAATGATTTTGCTGTAAACTGATGGTAATACAT
GATGTATTAGACAAACTTTGTTGCTCCCTCGGGAAGTAATCCACTTGCAATTGACTTCACGGGGATGGGAAAATGACAAACTTTCTTGCAACTTTTGCCC
TTTTTTTTCTTTTGAATTTTTTCTAACCATCGTGAATTATTATTTGTTTCATAAATCTCAGATAATTTGATTTCTTGCATACTTGATGCTTTTGCACTCT
ATGAAGGGATTATACTATTTTATCTTTTTCTTAAGCTTTGGTTGGTGCGTGATGGGATCAGTGACAAAGTGGGGAGAAGACTGAAAATAAACC