Detailed information on CNT0001219 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9C6I8|NOG1_ARATH, E-value = 7e-12

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0017143, E-value = 6e-22 (S. tuberosum)

Expression of CNT0001219

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.3870.155000000000.16500.15600leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.0250.050.0750.10.1250.150.1750.20.2250.250.2750.30.3250.350.3750.40.4…0.425

Peptides detected in this lncRNA

>peptide 1 (39 aa)
LLLLSFESVCRLQQNRVHKTNPRTERFSGLIEHDGSVQS*

>peptide 2 (29 aa)
YFFFPLSQCAASNKTEFTRQTLEPNVFQG*

>peptide 3 (218 aa)
MVQYNLKKITVVPNGKDVVDIILSRTQRQTPTVVHKWFMFLIFFFYYDANEYFYYQKKMKLPLLVAMILPKIRFRMILSDLNPFGKLYQEKLWWQHHQLV
ASISPSKGIYILCIGIICSRFLLFQTIRFSSGQWNSQSTLPTNQSLIWYKIIFRNIMSLCTYLVPFVGLWSVPFPVYSTVKLRECYYGKNDFAGLYYFIF
FLSFGWCVMGSVTKWGED*

Sequence

>CNT0001219
CCTACTTCTTCTTTCCTTTGAGTCAGTGTGCCGCCTCCAACAAAACAGAGTTCACAAGACAAACCCTCGAACCGAACGTTTTTCAGGGTTGATAGAACAC
GATGGTTCAGTACAATCTTAAGAAGATTACCGTTGTGCCAAATGGGAAGGACGTGGTCGACATCATCCTCTCTCGCACCCAGCGTCAAACACCAACCGTT
GTGCACAAATGGTTCATGTTTTTGATATTTTTTTTTTATTATGATGCAAATGAATATTTTTACTATCAGAAAAAGATGAAATTGCCACTTCTTGTGGCAA
TGATTCTTCCAAAAATCCGCTTTCGAATGATTTTATCCGATTTAAACCCTTTTGGAAAATTATACCAAGAAAAGCTCTGGTGGCAACATCATCAATTAGT
AGCTAGTATTTCTCCCTCTAAGGGAATTTATATTTTATGTATTGGAATAATTTGTTCTCGTTTTCTTCTGTTCCAGACAATCAGATTTAGTTCTGGACAG
TGGAATTCACAATCTACCTTACCTACAAATCAATCCTTGATTTGGTACAAGATAATCTTTAGGAACATAATGTCTCTTTGCACTTATTTGGTTCCCTTTG
TTGGTTTATGGAGTGTTCCATTTCCTGTTTACTCAACTGTAAAATTAAGGGAATGCTATTATGGGAAAAATGATTTTGCTGGATTATACTATTTTATCTT
TTTCTTAAGCTTTGGTTGGTGCGTGATGGGATCAGTGACAAAGTGGGGAGAAGACTGAAAATAAACC