Detailed information on CNT0001226 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001226

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.7292.344.3970.4122.9614.9595.381.9020000000.104leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.56

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MEEWNENREELIDLFGKVRDDWLYSSKQVVHSNVMK*

>peptide 2 (45 aa)
MNYEKLKAITELVIALSIDVQIKNVAASARRAELLLTLKVDSFAI*

>peptide 3 (29 aa)
WVISMLWTLMELSVIAVGRQLSLLLRLPN*

>peptide 4 (107 aa)
MGHLYALDFDGVICDSCGETAISALKAAKLRWPPLFDGVDSTIKDWIVDQMITVRPVVETGYETLLLVRLLLETRVPSIRKSSVGIKAYAFFYVIISFWC
NPLALIF*

>peptide 5 (68 aa)
MPEHQGLTLHFVEDRLAILKNVVKEPELDNWNLYLVNWGFNTQKEREEAEANPRIQVIELSDFSSKLK*

Sequence

>CNT0001226
ATGGGTCATCTCTATGCTTTGGACTTTGATGGAGTTATCTGTGATAGCTGTGGGGAGACAGCTATCTCTGCTCTTAAGGCTGCCAAATTGAGATGGCCTC
CCTTGTTTGATGGTGTGGATTCAACCATAAAAGATTGGATTGTTGACCAGATGATTACAGTACGGCCAGTGGTGGAAACTGGATATGAAACTCTTTTACT
TGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTCGGTGGGTATAAAAGCCTATGCTTTTTTTTATGTTATTATTTCTTTCTGGTGC
AACCCTTTGGCTTTGATTTTTTAGTTTAATTTTTATACACCAACAAGAGTTTTTATATTATCATCTAATAAAAAATCATGGTAAGTATGACTTTTCAATA
GTTTTTGTAAAAATTAATAAACTTACCATAATAGTGATTTCTGATTGAATAACAGTATAAAACTTTTTACATTGTTAGTGCAAAGAATTAATTATTTTCT
ATTGATTTTTATCTTGTATTAACAAGTGGAAGTCATATTATCATATTCTAAGGAACTTTGTCATCATCTATGATGATGCCATTTGACTGATGTCATAGTT
CTTCTGAAAGGTTTCAGAGGGGCTCACAGTTGAGGACATATTGGAAAACTGGTTCAAACTGAAGCCTATTATTATGGAAGAATGGAATGAGAATAGAGAA
GAACTGATAGACCTTTTTGGGAAGGTCAGAGATGACTGGTTGTATAGCAGCAAACAGGTAGTCCACTCAAATGTCATGAAATAGGATCACGTTTTTTTTA
GTACTTATACCTGATGAGATGAATTATGAAAAACTTAAAGCAATAACTGAGTTAGTGATAGCATTGAGCATAGATGTTCAAATTAAAAATGTTGCTGCAA
GTGCAAGAAGAGCTGAGCTCTTGCTTACATTAAAAGTGGATAGTTTTGCTATATAAACACTTGAGTTCTTGCTGTTGTTTAGCACCTGCTGATTGAATAG
ATATATCCTGGTGGCTAATTTGTGAATGCTTTACCTCTAGACTCTATCCTGGTACTGCTGATACATTAAGATTTGCAAGCTCGAAAGTGTACATTGTCAC
CACAAAACAGAGCCGCTTTGCTGATGCTTTACTAAGAGAGCTTGCTGGAGTGACTACCTGAAAGATTATATGGTCTGGGAACTGGTCCCAAGGTAGAAGT
GTTAAAGAAGCTTCAGAAAATGCCAGAACACCAAGGGCTGACACTACACTTTGTGGAAGATAGGCTTGCAATCCTTAAGAATGTCGTCAAAGAGCCAGAG
TTAGATAACTGGAATTTATATCTAGTGAATTGGGGGTTCAACACTCAGAAAGAGAGAGAAGAAGCAGAAGCCAACCCCAGGATTCAAGTTATTGAGCTCT
CTGACTTCAGTAGCAAGCTGAAGTAGTAGTATGTCCTCATTAAATTGTCAACCATTGAATAACATATTGTCTTCCGTCTCATTCATTTATGAACAACAAA
ATTTCTTGTGACTTCCTATTATTAAACTTGCAACAATCATGATTTAATTTTTAACCGTTTCCTTTCTTGTTAAACCGCA