Detailed information on CNT0001228 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001228

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.0411.4611.0675.690.99200.24402.2941.8342.8821.2112.0915.714.906leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.56

Peptides detected in this lncRNA

>peptide 1 (48 aa)
QRSREALLQRRRAKTQLSLSLLFVLWPLIFLFSRAHGYTPTPSDKRWK*

>peptide 2 (119 aa)
MVTLLHPQTKDGSDLKSWKSHISMQFGHLLRDNAVLRSEVNEVRRKQASLENKGVLVFLVCCIFSMLVILRLSLDMATSVYRVLQSVNRTDCSRKFCAVS
SSWFLLLLNCIIIIFILTL*

>peptide 3 (36 aa)
MVSPIIELYHYYFYINSVIVHFLNMLLTCVRCLVSI*

>peptide 4 (46 aa)
MASNLPLQSRSWLHSYTLRQKMEVISNLGSPIFPCSLVIYSGTMLF*

Sequence

>CNT0001228
CAGAGATCACGTGAAGCTCTTCTACAAAGAAGAAGAGCTAAAACTCAACTCTCTCTCTCGTTGCTTTTTGTTTTATGGCCTCTAATCTTCCTCTTCAGTC
GCGCTCATGGTTACACTCCTACACCCTCAGACAAAAGATGGAAGTGATCTCAAATCTTGGAAGTCCCATATTTCCATGCAGTTTGGTCATCTACTCAGGG
ACAATGCTGTTTTGAGGTCCGAGGTTAATGAAGTCCGCAGGAAGCAAGCATCTTTAGAAAACAAGGGTGTGTTAGTGTTCTTAGTGTGTTGTATTTTTTC
AATGCTAGTTATATTACGGCTATCTCTAGATATGGCTACGAGTGTCTATAGAGTATTACAAAGTGTTAATAGAACAGATTGCTCCAGGAAATTTTGTGCC
GTTAGCTCTTCATGGTTTCTCCTATTATTGAATTGTATCATTATTATTTTTATATTAACTCTGTGATAGTCCATTTTTTAAATATGTTGTTAACTTGTGT
GAGATGCTTGGTTTCAATATAGATATAGAAACTGTCTTCAAAGTTCTTTATTCATTTTTACTTGCAGTGAC