Detailed information on CNT0001230 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O74978|YQL5_SCHPO, E-value = 2e-19

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0011102, E-value = 1e-09 (S. tuberosum)

Expression of CNT0001230

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)7.9039.5128.6081.9750.1080.270.3170.3971.883.6261.6351.6811.272.1682.003leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.588.599.510

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MSRGFTTDCCFRISSISIVQSSAFVVLGLRKLCILKNIYRIIHFVYSSAVITFT*

>peptide 2 (41 aa)
MKLVEKIMKHDKNRRKRIEAAGVDYECPEIVWLTFSLLQRK*

>peptide 3 (78 aa)
MAQSVRHDLDSEMGTKVKKAMKNLKRATTNKPSEDADFLSLEGGPVCKQPEQKLLKNTATVLYVGRIPHGFYEKEMEG*

>peptide 4 (50 aa)
FFLIKCSAPNDPVHFVLKSQNPITVGLSYSRRLSRSSLIIKILIELELSY*

Sequence

>CNT0001230
CTTTTTTTCTAATAAAGTGCAGTGCACCAAATGACCCAGTCCATTTCGTTCTTAAAAGTCAAAACCCTATCACTGTAGGCCTCTCTTATTCTCGGCGACT
CTCACGCTCGTCTCTCATAATCAAAATCCTTATCGAACTTGAACTAAGCTACTGATTTTCTCATTGTTGTGGTGTCATTCTGACTCTCTTTTCTTCTCTA
TTCTCCCTGGTTTTCTTATCTACTTATTTTCTTCGTCCTTTTTGTTTGAGTTAGTAGTGTGAAGGAGACAAAACAGAGTTGTTGAATAAACATTAATCTA
GGCCACAGAGTTTTGATGCCTAGCAACAAGGACACTCCTCATTAGGTGACAATTAAAAAAAGATGTCGAGCCAAGCATTTGAACCAACACCTCCATGGCT
CAGTCAGTCAGACATGATTTGGATAGTGAGATGGGGACCAAGGTAAAGAAAGCTATGAAGAATTTGAAAAGGGCAACTACTAATAAGCCATCCGAGGATG
CTGACTTTTTGTCCTTGGAAGGTGGTCCTGTTTGCAAACAACCCGAACAGAAGCTGCTGAAGAATACTGCAACTGTTTTGTATGTGGGTAGGATTCCACA
TGGATTCTATGAGAAGGAGATGGAAGGTTAAATTGGACAATTTAGAACCATCAAGAAATTGAGAATTGCAAGAAATAAAAGGGCGGGAAAATCAAGACAT
TTTGGGTACATAGAATTTGAATAATCAGAGGTAGCAAAAATTGTAGCTGATACTATGCACAATTATCTCCTTTAAACAGGTTTATGTGATACCTCCGTAG
CATGCTAATCCAAAATTGAAAGAACATTGGAAGAGCACATGAAGTTGGTGGAAAAGATTATGAAACATGACAAAAACCGACGTAAAAGGATAGAGGCTGC
TGGCGTTGATTATGAATGCCCTGAGATTGTGTGGTTAACATTCAGCCTGCTCCAAAGAAAATGAAGTTTGAAGACTGATTGGGCTAACCTCGATACGTTA
GATGATGGCTGCTGATCTACATGTCACGAGGTTTCACAACAGACTGCTGTTTTAGGATTTCAAGTATTAGCATTGTACAATCGTCAGCCTTCGTAGTTTT
GGGACTTCGCAAACTTTGTATTTTAAAAAATATTTATAGAATCATTCATTTTGTATATTCATCAGCAGTTATCACCTTCACTTAAAACTTTTTATTTTTT
TAAATAAAATAAATTCTCAATATATTTGCCAGGACTGTAGATTGTTAACATGTGCAATTAAAGTGACCTTGGAAATTTTCGGTACGGTGTTTATTCAGTC
CATTCTCGAATCAGAC