Detailed information on CNT0001234 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FJL0|SMC4_ARATH, E-value = 6e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001234

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MAFISSHSSFSSLSLSASFPIYICSSSSMFPPPQKPCFKPREGYSVIRVLSVRGYFP*

>peptide 2 (36 aa)
LEPNKLTFSFLFFTHTLISVHSKIFLSSHFLTQTSL*

Sequence

>CNT0001234
ATTTGGAACCAAACAAATTAACTTTTAGTTTTCTTTTTTTCACACATACCTTAATTTCTGTCCACTCAAAAATTTTCTTATCTTCTCATTTTCTCACTCA
AACTTCACTATAAAATGGAAGCACCTTGGATCAATTTTTAGACACAAGTTTTTTTGAAACTGATTAACCATGGCTTTTATATCATCACATTCATCATTTT
CTTCCCTCAGTCTCTCTGCATCCTTTCCCATTTATATTTGCTCTTCTTCTTCCATGTTTCCACCGCCTCAAAAACCATGCTTTAAACCTAGAGAGGGATA
TTCTGTCATTCGTGTCTTAAGTGTCCGTGGTTATTTTCCTTAGACTTAATAAATCCCTTTCATCTTTTACTTTCAGCTTAAACCAATATAAATTATTAAT
ATAAATGTTTCTTAAATTGTTTTTTTTGGTACATTTGTTTTTGTTTTTTTGGTGAATACATTTGTTTTAGTTTTAATAATATATTGATATTGATATTATA
TATATGGTGTTAATTTATCTATAAAAATAACCAGTCTGAATGTGGAACACACCACTACTGGAAGAAACTAAGATATCATCTTATGACTAAGCTAGCTTTA
GGCAGCCATTGTTTTTTTTTGGGTATTTATGTTTATATTTTTTTATATTTGTTAAATGCATAACAAGGACATAAAATGTGGAAAATATCATAACACAGAT
GAAATTTAAATTATACAGGTTAACAGCAGAGGGGATTAGTAATTTGATGGCATGGACAGAGCAATAGCACTTGAAAGTAAGAGAAGTCATTCTCACCTTA
TCATTTAGAAGCTTAGCCTCTGTACATGCAACTTCAAGTTTTCCATTGTGCTCAATCAAATCTTTTTCCCAAGGTTCAAGCTCAGCACGAACTTTAGCAA
GCTCAGAGCGGTATTTCTCAGTTTCAACTGCTTACCAGTCAATGACAGAGTTAACAAAGGCAAAAAAAATACAAGTAACTAAAAACCCTCTATAGCACAT
AGGATATTAGCTCCATTTGTCTACATGGTAGATAATATTAAAAACATAAAGACCAGCTACCACCACCAAAAACACTGAAAATCAGCTTGATGCATCCCAG
ACAATAACAACAAAAAAACAATTTAGACCTTGAGATAATTATATACAGTTGACTAAAATAAAAAATATAAGAACATATTTTGAAATAAATCATGCCAATA
TATATATATATATATATATTCACCTTTCGAACTCTCTGTGATTTCTTCTAAGACCTTCTCCTCATCAAGCA

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G22090.1 Uncharacterized protein protein coding CNT0001234 626 234 CDS Trans
GLYMA09G14100.1 Uncharacterized protein protein coding CNT0001234 1804 682 CDS_UTR Cis
GLYMA13G05430.1 Structural maintenance of chromosomes protein protein coding CNT0001234 1563 621 CDS Trans
GLYMA14G17770.1 Uncharacterized protein protein coding CNT0001234 1404 621 CDS Trans
GLYMA17G32880.1 Uncharacterized protein protein coding CNT0001234 920 398 CDS_UTR Trans
GLYMA19G02680.1 Structural maintenance of chromosomes protein protein coding CNT0001234 833 411 CDS Trans