Detailed information on CNT0001241 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P51425|RL39_MAIZE, E-value = 8e-21

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0030176, E-value = 2e-08 (O. sativa)

Expression of CNT0001241

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MGLFCLIFFASFFLILNVLWEGYTNINKPRVTVERRIIPMISIDGERSGESFLPFSPPIVEHA

Sequence

>CNT0001241
GTCGGAGGTTGACATGGACCTTAAAATCCGAGCTTGGTGCGGCGCCAGTGCCTGCGCTTAGCATTGTACCTGACGAAATATAGATAAAAATCAAAAGAAC
TAAATGAGGCAGAGGCAAAATTTGCAAAACGCAGCGTTTGGTAGAAGTTTGTAGAACGAGCTATAACAAAAATTAGGGTAGTCGGAACCTGATAGTGTTG
TCGGTTCTCATGCGGATCCAATAAGGGATGGGTCTGTTCTGCCTCATCTTCTTCGCGAGCTTCTTCTTGATTCTGAACGTCTTGTGGGAAGGCTACACAA
ACATCAACAAGCCACGTGTCACAGTGGAACGGAGAATAATTCCGATGATAAGCATAGACGGTGAAAGGAGTGGAGAATCTTTCTTACCATTTTCGCCGCC
GATTGTTGAACACGCCGC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA09G12500.2 Uncharacterized protein protein coding CNT0001241 1220 418 CDS_UTR Cis
GLYMA15G24650.1 Uncharacterized protein protein coding CNT0001241 555 418 CDS_UTR Trans