Detailed information on CNT0001262 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LDA9|CAF2P_ARATH, E-value = 2e-22

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001262

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.9533.5133.67401.6512.5611.051.0741.1972.0741.1281.5160.91.1172.823leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)012340.250.50.751.251.51.752.252.52.753.253.53.75

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MPPSRGTSRWYLERRWCLRVFGGCGTWNWPVVRVFCGEGGIWLMFHGDKGITGAHLLCYPGAFNMTTGSLHWELLQRARK*

>peptide 2 (55 aa)
MTARGWQSASPSTSWNSRTETRTARWGVGTTRRNPQLRCHHLGELAGGTWSGGGV*

>peptide 3 (50 aa)
SLILVFSVLTFLAFSPSSGGWCGSGCKMPSTTLTRRRTSSLSRAAVETSL*

>peptide 4 (46 aa)
MCDKFLKAYAKGRKVLSTFARYDRNGSYYNEIERVKLALNKRKLEH*

Sequence

>CNT0001262
CTCTCTTATTCTTGTTTTCTCTGTCTTGACTTTTCTCGCTTTCTCTCCCTCTAGTGGAGGATGGTGTGGGTCTGGATGTAAGATGCCCTCAACGACGTTG
ACAAGGAGGAGGACATCATCGTTGAGTCGAGCAGCAGTGGAAACCTCGTTGTAGAAGTCGATGTGGTCGGGCAGTGGGGAACCTTCTTGCTCTTCTTGCC
CTTTAGTGGTGCCTTCTCGGTCCATGACCGTGACATTGTAGGCGGCACGAAGGGCGGGAATGACAGCTCGTGGATGGCAATCGGCTTCACCTTCGACGTC
TTGGAATAGTCGAACTGAAACTCGAACGGCGCGGTGGGGAGTAGGTACAACACGCCGGAATCCCCAATTACGATGCCACCATCTCGGGGAACTAGCCGGT
GGTACTTGGAGCGGCGGTGGTGTTTGAGGGTTTTTGGCGGCTGTGGTACTTGGAACTGGCCTGTGGTTCGGGTTTTTTGTGGGGAGGGGGGTATTTGGTT
GATGTTCCACGGGGATAAAGGCATTACTGGTGCTCACTTACTCTGCTACCCTGGGGCATTTAACATGACAACTGGATCATTACATTGGGAGTTATTGCAG
AGGGCAAGGAAGTAATGGATACAACTTAATGAAACATTTAACAGGCTACAGATAATCTGCAGGTAATGGCCCCTTTGAACTTATGTTACTTTTAATGCAT
GTACACTAACATTTTAATTTAAAAGTATATAAAATTTGAAATCATCTAATCGTTTTTATTTATTTATTATTTATTTAGTGTAGTTCTTGATGGATGAACC
AAATAAGAGGCTTGAAACAGTAGCTTTGAATTGAGAGATACATAGTGAATGAGAAATCAAACCCCCCAACCCCATTAGGAATTTATAGTAGATGTGTGAT
AAGTTCTTGAAAGCATATGCTAAGGGAAGGAAGGTACTATCCACATTTGCAAGGTACGATCGCAACGGCTCGTATTATAATGAGATAGAACGTGTTAAAT
TGGCATTGAATAAGAGAAAACTTGAACACTAACTGTACGCATACATTATATGTTCTAACATGTTCTCAAGCTGGAGCATATATATTAATTATTTTTATCT
TGTAAGTTGTAAAATATATAGTTGATTTGAGGAGTTAGCAAAAATATCTGCCAGATAATTGCAGCAGGAATTTCTCAGGAGTTATGTTTTTACACATATT
CCACTTAAGTTTATTTACCTTGAGTGGAATGGTTTGATATCTCTCGAAAAGAACATGTTGCAACAGCTGTATTTGACAACATATAATTGCCAGGTGTGGA
ATGTGATTCCATGTTTTAAAACTTAGTTTTCTCAGATGGGACTGTATTTGGTCCAAACCTTAGTACCTTTATACTGAAGGAACAACTTTTGAAGATATCT
TTATATAAGTTCTTTTGTCTATCTTTTTTCTGTTCATCTAATGCTTTTGAGAATTGGAC