Detailed information on CNT0001269 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P29450|TRXF_PEA, E-value = 8e-37

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001269

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)12.52616.05318.414.45644.95854.38592.14260.19.71311.58312.30413.43912.16513.3635.981leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)05101520253035404550556065707580859095100

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MPSTWLDVYLSNQIKIYVSKSLSYYHDLIHIYM

>peptide 2 (71 aa)
MAPKFQELSEKYLDVVFLKLDCNQENRPLAKELGINVVPTFKILKDNKVVKEVTGAKYDDLVDAIDKVRSS*

Sequence

>CNT0001269
GTGGGGTTCATTTTAGGGGGGAAAGTGAGAAGTTATAACCACACTTGATGCATCTCTACTAATAGTAGATTTTACTATCAATAGTTATAGCTTCTTGCTT
TTGCCAACAAGGTGACCCCTTATTTTATTGGTAAAAAAAGATGAGGAGGCATTTATCTGGTTAAATATATCAGGTGTGGCCCTTGCAAAGTGATGGCTCC
AAAGTTTCAAGAATTATCTGAAAAGTATCTGGATGTTGTCTTTCTAAAGCTTGATTGCAACCAAGAGAACAGGCCCTTGGCAAAAGAGCTGGGAATTAAC
GTGGTTCCCACTTTTAAAATTCTGAAGGACAACAAGGTTGTAAAAGAAGTTACTGGAGCTAAATACGATGATTTGGTTGATGCCATTGACAAAGTTCGAT
CTAGCTAAAAATATATATGACTATTCTCTTTCTATGTAAAAATAATATGCTTGACTCCCTCTGTAAGTATTTTATGCAATTGTAAGCTGATGAATGATGA
TGATTGGAAGATGAAGAAATGTCATCATGTGATTGTTGCAAGCCGTAGTTGTTTATTCCCTATTCCCTAAGTCCAGGGAAGGGTTCCTCAATTATTTAAG
TCATCAACTTGATCATGGGGTGTCTATAAAGTGGCCTGGCTGATATTCTTAAAAATAAAATAGAAATGGCTGTGATAAATGTGGATATCGAATCAGAGAT
GTCAAGGTATATCTAATCCAGAGGTATTTTAGTAAGCTAATATTATCTAAATAATGCCTAGCACGTGGTTGGATGTATACTTGTCAAATCAGATTAAGAT
ATATGTTTCTAAATCATTATCATATTATCATGACTTAATTCACATTTACATGTT