Detailed information on CNT0001283 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001283

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MKLRKKKERKTRTLMVILGFMGLLAPQRISEKNEKR

>peptide 2 (51 aa)
MDPKKCACVAVCEFQSGIQCDHIGGYPCCIRTSLDPYMIKRYALQNAQKIK*

Sequence

>CNT0001283
GGATCTTACATTTCCCGCAGCAATTACAATGTCTGAATAAGAAAGTTCCACGGGTGTGGATGTGACATGGACCCCAAAAAATGTGCCTGTGTTGCGGTAT
GTGAATTTCAAAGTGGAATTCAATGTGATCATATCGGTGGCTACCCCTGTTGCATCCGAACCAGCTTGGACCCTTACATGATCAAACGTTATGCTCTGCA
AAATGCCCAAAAAATCAAATAAATCATCGTGTAGACCCACTTAAAATTTCATCCTGAAAACATGAGATTAATCAAGAACTAGTTCATATTTCCTTCCAAA
AATGACAAATCGAACTAGGTCCACTTTGGATTTCATTTCAAAAACACGAAATTGATCTAAAGACCCAGTTCATATTTTAATCTGAAATTAATTAAGAACT
ATTAAAACTCAGCTCATATCTTTTCATTGTAAAAATGAAAAGATAAATCAAAACCCAGTTTAGATTTCATCCTAAAAATTCAAAATTGATCAAGACTCGG
TTCATATCTCATTCTAAAAACGAAAAATCGATCAAGACCCAGTTCAGATTTCATCCTAAAAACGAAAAAACGATCAAGAGCCAATTCAGATTTCATCCTA
AAAACGCCAAATTGATCAGGACCTACTTCATAATTCATCCCAAAATCGAAAAACCAATCAAGCCCCGGTTCATATTTCACCCGAAAAACGAAAACTCAAA
CACGACCCATCTTAGATTCCATCCTAAAAACTCAAACTTGATCAACACCCACCTCACTTCCCATCCTGAAAAACTCAAACCAAGGATCATGAAGCTAAGA
AAAAAGAAAGAAAGAAAAACACGTACCCTGATGGTGATCTTGGGCTTCATGGGTCTACTAGCCCCCCAAAGGATAAGCGAGAAGAACGAGAAGAGAAC

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G11160.1 Uncharacterized protein protein coding CNT0001283 767 424 CDS Trans
GLYMA07G11160.1 Uncharacterized protein protein coding CNT0001283 482 319 CDS Trans
GLYMA09G31070.1 Uncharacterized protein protein coding CNT0001283 1208 445 CDS Cis
GLYMA09G31070.1 Uncharacterized protein protein coding CNT0001283 910 322 CDS Cis