Detailed information on CNT0001295 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O80961|MLO12_ARATH, E-value = 7e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001295

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.9533.2813.6320.4971.6251.4972.8751.79700.0890.0970.1060.18300leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)012340.250.50.751.251.51.752.252.52.753.253.53.75

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MHFFYVTMHSHCSRTCNWLMGEKQREQAIFFLEKYFYISFN*

>peptide 2 (30 aa)
MLDRIDKIRHMNTTIVQVVPDAGHSANEPA*

Sequence

>CNT0001295
AATTAAGGTCTCATATATATGCATGAAAGGTACCTCCTCTATGAGAAAGGATAAGAAACCTAGTTAACTACAGAATTCCCACTTAGTTTCTCATCAAATA
GAAAGAGAAAGAGAGACAGGGAGAGCATTTCATGGTGGAAGGAAGGTATCACAATAGCAGACTGGCAGAGGCGTCCCACCACATTTCCTAAGAGGTTCAG
GCTTGCAAAGGACACAACATTTGGGCAAAGGCACTTGAATAAGTGGAGTCAGTCATCATTTTCCTTATGGATGGTAAGGACATATTTATTAGAAGAAAAA
AAAATCTCTTAATTAGCCTTTAGCTAAATTCTGAATTTCGAGATTTTAGTTTGCAAGTGACACGTAAATTAATTTCAAAGTTCCTCATGCTTTTGTACTC
TGCTCGAATCAGGTTAGCTTCTTCAGACAATTCTCTGGATCTGTTAAAGAAAGTTAAATAATAAAAGTTTCCTTTTAATTTGTTCACTGATATATTAAGT
GAAAGCCTGGTTATTGATTGTGATGAATAGAGTAGAAGGAGGACAATTTGTTGCAGTGAAGAACTGAACCATGGTGATATTGATTGTGATGACTTTCTTT
TATATATAAAGAAGTAACTCTATTTGACTAGGGATTGTCTGACTTTACAAATTTTAACAAGGGAGAAAACAAGTTCAAAAAAAGAAGTGTAGAATCTTTT
CCCTTATTAATTTAGGATTTGTTTATGATTGTGTTTTGCTGTTGTTTGTGGTTGAGATTCTTTAACTTATACTGATGAGTGATAACAAATACTTACATTT
TTCTATCAGGCATTTGCAAGGATTGTAAACCACTATTTTGTGAACAATGTTGGACAGAATTGATAAAATAAGGCATATGAACACCACAATTGTTCAGGTG
GTTCCAGATGCAGGGCATTCAGCCAATGAACCAGCATAACTGATGAACTCGTGGCTACAAATGAGAAATTGAAAAACATAACCAAGACTAAAGGGGACTC
AAGTGAGTGGACAGGCAAATAGGAACTCCTGTAGCTTTATTTGAACTACATTCGGATTACTTTTGAACCCGTATCTTTTGGTTGAATATTTGTAGATTTG
TTTTATTTATTCAAATGCATTTTTTTTATGTAACTATGCATTCTCATTGTAGCAGGACGTGCAATTGGTTAATGGGAGAAAAACAAAGAGAACAAGCCAT
ATTTTTTTTAGAAAAATATTTCTATATCAGTTTTAATTAGAACTGATGTATAAATTTCTTATAACAACATCCACCATCCATGAAATCGATATTGTATAAA
TTACAATT