Detailed information on CNT0001303 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001303

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.6730.811.10400.48100.1580.1482.1431.5821.1470.3130.6760.4620.56leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.4

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MQDETSFCVCYLIHLLSLCLTCDGVMLPAQNHK*

>peptide 2 (40 aa)
MPSTSIQCNQLLFQPKFVNKLGCYKSCSPKNHKLKIHHHY*

>peptide 3 (37 aa)
MSEILSSFFSHNMTEILSSSSNNFPCSSHISTATRGS*

>peptide 4 (38 aa)
DFFHYLRLGQQLCSFYFRRMSREIVPTKHFVKLLPQYV*

Sequence

>CNT0001303
AGGATTTCTTCCATTATCTTAGGTTGGGCCAACAATTGTGCTCTTTCTATTTCAGAAGGATGAGTAGAGAAATAGTTCCAACCAAACATTTTGTCAAGCT
TCTCCCACAATATGTCTGAGATTCTGTCAAGCTTTTTCTCCCACAATATGACTGAGATTCTGTCTTCCTCCTCCAACAATTTCCCATGCTCCTCCCACAT
TTCGACTGCCACCCGGGGATCATAGCCGGCTGATGCCATCAACATCAATCCAATGTAATCAGCTTCTTTTTCAACCTAAATTTGTGAATAAATTGGGTTG
TTACAAAAGTTGTAGCCCAAAAAATCATAAATTAAAGATACATCACCATTATTAACCCCTCTCCTTTCCATCCCAATGTTTTCTTTCATTTCAAACGAAG
TGTTAAATGATGAGTACTAAGTTATGTGACACCTAGTGGGATAAGGCTTTGTTGTTGTTGTTGTAATATTGGAAATACCCTTTTAGATGCAAGATGAAAC
TAGTTTTTGTGTTTGTTATCTTATACACCTTTTGTCTTTATGCCTAACCTGTGATGGAGTGATGCTACCTGCACAAAATCACAAGTAGCTGCATGATTTT
AATAGGGAAATATCTAAGTAGTCCTGTTTGAATTCAGAGAGAACCACTTGTGTATTTGTAGGCTTAGTTTTGCATAGAGCTGTATACATCATTTGATGGT
ATATGATATGCTTGCAAGGAGGGAGGTATGGTTTCTTTAGTTAATCTCTTGGAGAAAAAATAAACTAATAAATATGAGATAAGAAAGCCATGGTTTATAA
CTTCAGTGTTTATGGAATTAAAATTCATCGTGTTTAGAAAAACAGAATTTCACACATAAATGTCATTAAACATCAAAAAATAA