Detailed information on CNT0001314 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001314

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MCSYCHPVFPKRINFLSVLFKETAPKNELLHKHSRQTNLIS*

Sequence

>CNT0001314
GTCGGTATTACTTTTGTTAGCTAAAGATCATAAGGAAAACGAAGGGGGTGGAGGGAGGTGAGGATAAGTTTATTTTACAGGCAACCATCCTCATGTTAAT
GCAACAATTTTATTTGACTTGAGAAGCATCAACATTTAAATGACTTTGTTATTATGTGCAGTTATTGCCATCCTGTTTTCCCCAAAAGGATAAACTTTCT
TTCGGTACTTTTTAAAGAAACAGCTCCCAAGAATGAGTTACTACACAAGCATAGTAGACAAACAAACCTGATATCCTGACACTTTTCAGTCGCTTCTTTT
CCTCAGAAATCCGAG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA05G32720.1 Uncharacterized protein protein coding CNT0001314 435 173 CDS Trans
GLYMA08G00380.1 Uncharacterized protein protein coding CNT0001314 818 298 CDS Cis