Detailed information on CNT0001316 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001316

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRRNKTVPILPASPCCEASDYQHCFRQLLFRP*

>peptide 2 (33 aa)
LVPGQALSFHSHPFLVPVIKLSIIQETTIMKKC*

>peptide 3 (79 aa)
ACARTGSIIPLPSFPSPCNQIIHNTRNNHNEEMLESFGGYVEKIPNFQGYPIQFLRSKMTEENNIYTCVCVYYIHIYLN*

>peptide 4 (67 aa)
MLRSIRLPTLFSSIAFSAVITSKVSRLASPTMRPPPTPGGNGMGSPFLDAKSRSSRILESPISRSAKS

Sequence

>CNT0001316
GGCTTGTGCCAGGACAGGCTCTATCATTCCACTCCCATCCTTTCCTAGTCCCTGTAATCAAATTATCCATAATACAAGAAACAACCATAATGAAGAAATG
TTAGAATCCTTCGGCGGATATGTTGAGAAAATACCAAATTTCCAGGGGTATCCCATCCAATTCTTGAGGTCCAAAATGACTGAAGAAAATAATATATATA
CGTGTGTGTGTGTGTATTATATACACATATATCTAAACTAGAGGAAAATATTATCTAGGTCTAGGATCAAAGTACTAGCATATCCCTGAAAAGAGGAAAT
TTGGAATAATATATCAAGCTCTACCAAACAACTTGAATAACAAAAAAATGTAATACGTAAAAACTCATGTAATGAGGAGGAACAAAACGGTACCAATCCT
TCCTGCCAGCCCATGTTGCGAAGCATCCGATTACCAACATTGTTTTCGTCAATTGCTTTTTCGGCCGTAATCACCTCAAAAGTATCAAGGTTGGCATCTC
CAACTATGCGTCCTCCACCAACCCCAGGAGGGAATGGCATGGGATCACCCTTCCTTGATGCAAAATCTCGATCTTCAAGGATACTTGAATCCCCAATTTC
AAGGTCAGCTAAATCATT

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G35510.2 Uncharacterized protein protein coding CNT0001316 1626 584 CDS Cis
GLYMA08G35510.3 Uncharacterized protein protein coding CNT0001316 1626 584 CDS Cis
GLYMA16G18030.3 Uncharacterized protein protein coding CNT0001316 689 275 CDS Trans
GLYMA16G18030.3 Uncharacterized protein protein coding CNT0001316 464 220 CDS Trans
GLYMA16G18030.4 Uncharacterized protein protein coding CNT0001316 689 275 CDS Trans
GLYMA16G18030.4 Uncharacterized protein protein coding CNT0001316 464 220 CDS Trans