Detailed information on CNT0001326 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0001326

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MLQHYIIKQTYRAKHKCASDTPGSCPARTPRNPVVPTTVKRKAACTIKDFCYLLVKNAYNLQETCVFKIESLNRNY*

>peptide 2 (65 aa)
MLHGKHNSSYPGDMLPTAKTTNEILPIKYGTKKPQSYKIQHTSIRDGKKSQNYFKVCLVECVGSS*

>peptide 3 (83 aa)
MANTILLTLGICYLQPKPLMKYSQSSMVQRSPNPTRFSTHQSEMEKKVKIILRSAWWSVWEVVRRKIQGKSIFKQFFFPILTL*

>peptide 4 (48 aa)
MTGISAFTNACFNTISLNRHTEQNTSVLVIPREVAQPEHPEILLFQPQ*

Sequence

>CNT0001326
TCAAAAAGTGAGCAGCTTCATGCCTGGCAATCCTTTCTTGATAATCAGGAAAAAGTGTTGAAAAGCTGCCAATAGCAGCTTGGAGAAGCCTACACTAGCA
ACTTGGAGCATTAATGCAAAACAAATTAACATTTAACACTTAAGAGGGGTATCCAATGCTACATGGCAAACACAATTCTTCTTACCCTGGGGATATGCTA
CCTACAGCCAAAACCACTAATGAAATACTCCCAATCAAGTATGGTACAAAGAAGCCCCAATCCTACAAGATTCAGCACACATCAATCAGAGATGGAAAAA
AAAGTCAAAATTATTTTAAGGTCTGCTTGGTGGAGTGTGTGGGAAGTAGTTAGAAGAAAAATACAAGGAAAAAGTATTTTCAAACAATTTTTTTTTCCAA
TTCTAACTTTGTAAGCCACAAAAAGCATAATACAGTCTTAAGTATCACCAATGTTGGCGTTAGAATACAATATGTAGAGTGAGACCATGATGCATGTAGC
AAAGGAAAGAGTTTCTAAATCTTCCACTTTGGTTGCTCTTTAATCTGGTTGCCAAGCAAGCATTTAAAATCCATAAAAATATATTATTCTACTAGAAGCT
CCAACCACATACTGCTTCCATAATAATTTAGATTATTTCTGCAAGCAAAATGACTGGCATATCTGCATTTACAAATGCATGCTTCAACACTATATCATTA
AACAGACATACAGAGCAAAACACAAGTGTGCTAGTGATACCCCGGGAAGTTGCCCAGCCAGAACACCCAGAAATCCTGTTGTTCCAACCACAGTAAAAAG
AAAAGCTGCCTGCACCATCAAAGATTTTTGTTACTTGTTGGTTAAGAATGCATACAACTTACAAGAAACATGTGTTTTCAAGATTGAAAGTCTTAATAGA
AATTACTAGTTGCCAC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA05G31720.1 Uncharacterized protein protein coding CNT0001326 2006 915 CDS Trans
GLYMA08G14970.1 Uncharacterized protein protein coding CNT0001326 2500 916 CDS Cis