Detailed information on CNT0001350 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9ZTN2|ERD2_PETHY, E-value = 2e-106

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0006338, E-value = 1e-69 (V. vinifera)
CNT0021704, E-value = 5e-38 (A. trichopoda)

Expression of CNT0001350

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)6.6987.9786.9519.8428.2347.2717.8986.02627.73121.39722.25123.81728.7710.9116.094leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)02468101214161820222426283032

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MLKSGIEPQTLVKKGPQCLTTCANNFRFWCFFMIGGACAALLFGSYLSIQCAERTLLYVRSHLAS*

>peptide 2 (29 aa)
MSFSSVHTEDYTFSTGSIATLLSPTLSIG*

>peptide 3 (33 aa)
MLISSITISKAGRTTKSFICQHEFILLFLKTRV*

>peptide 4 (35 aa)
MCYCVFVALISAKWKCSGILWLGERSVEIIITVGL*

>peptide 5 (237 aa)
MKKKVVQVSSIHLLNCGFSFCIFRPLIDYGLFLKYISYIFPMLTLGASYLCAGVSLKTQELYALVFACRYLDIFTNYVSLYNTTMKLIFLGSSFSIVWYM
RYHKVVRRSYDKDQDTFRHYFLVLPCLLLALLINEKFTLKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRGLYILNWIYRYFTEPHF
VHWITWISGLVQTLLYADFFYYYFQSWKNNKKLHLPA*

>peptide 6 (42 aa)
MFQFTGSVFWCWFLWCYFFCLTRRYLGLLIWHPTNPLPLGLG*

>peptide 7 (53 aa)
MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGRYLPFQSQHSSLALFCFVEDMS*

Sequence

>CNT0001350
ATAAAATAAAAAATAGAAAGAAAAAAAGAGAGAGAAAGAAAGAAGTAAAAGACGTGAGTCTCAGCCGGGGCATGTTCTGAAGTCTTCTTCTCTGCTTGTA
TGCAACGGCCACAGCCATAGTCGCCTGAAACCGATTGTTGTTGCAGGGAAAACACAGAGATCCGGGTCGACCCGTTGCAGATCCGATCCAAATAAGAAAA
GATGAATATTTTCAGGTTAGCCGGGGACATGACCCATTTGGCCAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGGTCGGTAC
CTTCCTTTCCAATCTCAACATTCATCGCTCGCTCTGTTTTGTTTCGTTGAGGATATGTCGTAGATTTTCATTGTAATAATGCTGACGTGTGTCCGCCAGA
GCTATTATTGCTTAGCGCTGTGGGGTTGGGTTGGGTGATTTTGTTATGTGTTACTGTGTTTTTGTGGCGTTGATTTCGGCGAAATGGAAATGCTCTGGAA
TCCTGTGGCTTGGGGAAAGGAGTGTGGAGATAATAATAACTGTGGGATTATAAATGTTGTGTGTTGAAATTATTTAGTGCTTGTTCTTCTCATTGTTAAT
CTCAGAGAGGGTTACAGATTGTGAATCCGCAGGATTGCCTCTGTAGGGAACCAGAAATACTGTGTGTTGAAATTATTTATTGCTTTCAAAGTCTCCTGTT
AGGATTTTGTTTTCAGAAGGAGCATTTCTAGTTGATACAACATGTTTCAGTTTACTGGTTCTGTTTTTTGGTGTTGGTTTCTTTGGTGTTATTTTTTTTG
TCTAACCAGGAGGTATCTGGGGCTTCTTATTTGGCACCCAACTAATCCCCTTCCACTGGGTTTGGGGTAAAGTGGTACCTTAAATTGCGACTCCATGCTT
AAGTCGGGGATTGAACCCCAAACCTTGGTTAAGAAGGGACCCCAGTGCCTAACCACTTGTGCCAACAACTTTCGGTTTTGGTGTTTTTTTATGATTGGGG
GAGCTTGTGCTGCCTTGCTTTTTGGATCATATCTTTCTATTCAATGTGCAGAACGTACTTTATTATACGTAAGGAGTCATCTTGCATCTTGACCCCTTTC
TTTTAAACTAATGTTGGGGATTTGTGTTAACAAGGCTTCTTGCCTTCTAGAATAGATATAAATACAAGGTATCATATCTGAATTCTGAGGAAAGAAGTTT
CTATTTATGTCTAACAAATGTCACTTATCAACAGACAGCAATGTTGTGAGCCAGTACATTGATCTCAAAGTATGTTTCTAAAAGTTTGAGTATCTTACGG
AAGTAGGACATGTATAATTAATTAATCAGACTAATCTTTTGTGTTGTCTATTTCTCTTTGAGCAAGAAATGGCAAGTTCCAAAGTTCTACATTTGTAAAA
TTTGTGTAATGAGACCACTATATTGGCATAACTCTAAGTACACAGTTATAGTTGTTGACAAATGAATGGAACTGTAAGTCAAGTCTTATGCAAGTGATGC
AGGACAATGATGGTCAATGAGTCAATCAAAATTATTTGTTTGCTGTTGCTTAAGCTATTTTAGTTGAGTATTTTTCATACTACTGTAACTCAAGTACTGT
TTGTATTTCTGATGTGTATGTGTATTGTGATAAAGAACAATTAATAGCCTAAACCAAAGCTTGACATGTAATTATAAAAAACTTTTGTGCTGCATCAATA
TGTACATGTCTTTCCCTCCTATGTTTGTCTTTTTATCTATGAAGGGAAGGACAAAGACTATTTTATCCATTACCATATGAAGAAAAAGGTAGTACAAGTG
AGCAGTATACACTTACTTAACTGTGGTTTTTCATTTTGCATATTCAGGCCATTGATTGACTATGGTTTGTTTTTAAAATACATTTCATATATCTTTCCGA
TGCTGACTTTGGGTGCATCTTATCTGTGTGCAGGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTACCTAGATATCTTTAC
TAATTATGTATCTCTCTATAATACCACTATGAAGTTGATATTCTTGGGAAGCTCATTTTCTATTGTGTGGTACATGAGGTACCACAAGGTTGTTCGTAGA
TCATATGACAAAGATCAAGATACCTTTCGCCATTACTTTCTTGTATTGCCCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGG
TCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAACTAGTACTTTTACAGAGAACTAGAAATATTGACAATTTGACTGGACAGTA
TGTCTTTCTCCTCGGTGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAACATGGATTTCT
GGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTACTATTTCCAAAGCTGGAAGAACAACAAAAAGCTTCATTTGCCAGCATGAGTTTATTCTT
CTGTTCTTGAAAACAAGGGTCTAAGTGGACAATTAACAGTAAGCAGAGAGGATTCACAAATTTGTCTGGACATAGTGGTTTCTGATTTACAATTGCCTAT
TTGTTCGTTCTTGCCACCTCAAATACTACTGTACTAATGACTAGGAAGATTATAGACAAAAAGCATCAATTTGTTTGTGATTGTAATTTGCAATTTTAAC
TTGAAAAAGTATTTAGATCTAGATTGTGGCACAATGCATTTTGATCTTTTACTCTTCCCTTTCTTCATTTAACTTGGGTAGTATTAATACAGATAAAGAT
CGTTCTTGATGAACACTTTGTTTTCATGGTAAAGACTCT