Detailed information on CNT0001358 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001358

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.4701.013000000000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.6

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MATAVLEDGGISRTRQNSMPVDAILKSLKKGELMT*

>peptide 2 (119 aa)
MISGDTGRFVCNYVYYHSTPSDLQNRRVTSLYLSMFPYFQESIKKPKCDSQHLFWMSLLLHVNATLDMFTRIAMSTCKSSVSKSNAIIKQSMMNELQSCL
FFSGPLLKFGCYAKVLNAL*

Sequence

>CNT0001358
GCTCTTTCTTTCTCCTTCTTCTTCTTCAACATTGCTATGTTGAAATAAAAAAAGTCCTCAAACTAAGCTTTTAAGTCATAGCAAAGTAGTGGTGTGAATT
CCCAGTGGAGCTGCAAGGTTTGTCATTGAGCATCAGGCAGCAAATGAGCCAACTTTCCGCTGTCCAGATGAGTTAGGATGGCAACCGCAGTCCTTGAGGA
TGGAGGAATTTCTCGAACCAGACAGAATTCTATGCCCGTTGATGCAATCTTGAAATCCTTGAAGAAGGGAGAGCTTATGACGTGATGATTTCAGGCGACA
CAGGACGCTTTGTGTGCAATTATGTGTACTACCATAGCACTCCCTCCGATTTGCAGAACAGAAGGGTAACAAGTCTCTATTTGTCCATGTTCCCCTATTT
TCAAGAGTCGATCAAGAAACCCAAATGCGATTCACAGCATCTCTTTTGGATGTCATTGCTTCTGCATGTTAATGCAACATTGGATATGTTTACAAGGATT
GCCATGTCCACTTGTAAATCATCTGTCTCAAAGAGCAATGCAATTATAAAGCAATCTATGATGAATGAACTGCAAAGTTGTTTATTTTTTTCTGGACCAT
TGTTAAAATTTGGGTGTTATGCTAAAGTTTTAAATGCTTTGTAACCAAGTTTCATCACACCCCACTATGTAGTTCAATGCTGTTCTATACAACACCTAGG
ATGGTCAATACTCTATATTCTAGACATTTATTCTATAGGAAGGAAGCAGAATGAGTTGGGTTAGCTATGCCCTTTAACATGTGAATGTTATGGAAAGGCA
TAGGTAGGTGCTAAAGTTAGCATATATGGGGATTGTCTTCCA