Detailed information on CNT0001359 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LY87|RGLG2_ARATH, E-value = 7e-38

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001359

Peptides detected in this lncRNA

>peptide 1 (53 aa)
GIGHDFSQLCLLQPQSQEHKMLVLQTVSNLEQLFDSKPKLPQNHGKVNDHCES*

>peptide 2 (47 aa)
MELAMTFLNYVYCSLNHRSIRCWSFKQSQIWNNFLIASQNFLKTMAR*

Sequence

>CNT0001359
ATGGAATTGGCCATGACTTTTCTCAACTATGTCTATTGCAGCCTCAATCACAGGAGCATAAGATGTTGGTCCTTCAAACAGTCTCAAATTTGGAACAACT
TTTTGATAGCAAGCCAAAACTTCCTCAAAACCATGGCAAGGTGAATGATCACTGTGAAAGCTAAACACTTCTTGATCATGAGTGGTCGCTGTTTAGAGAC
AGAAGTTGAATCATTTTAATATTGGAAAAACTAACTTTCTTCGATACATTTTCAGCTGTAAGGATTAGGCCTTACCATCCCCAAAGCCAAAACATGGAAT
CAAGTTATCATCATCAAAGGGAGCAAGAGTCTTGCCAATAATAGAGATGGCTTTCTCATAGGGGTTAGCGGTACTTCCAATAGCATGAAGGCTTTTATTG
TTGAATGAGACACTTCCTTCAATAACAACATGGA

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G00360.2 Uncharacterized protein protein coding CNT0001359 144 141 CDS Trans
GLYMA08G25390.5 Uncharacterized protein protein coding CNT0001359 987 361 CDS Cis
GLYMA08G25390.6 Uncharacterized protein protein coding CNT0001359 987 361 CDS Cis
GLYMA08G25390.7 Uncharacterized protein protein coding CNT0001359 987 361 CDS Cis
GLYMA08G25390.8 Uncharacterized protein protein coding CNT0001359 987 361 CDS Cis
GLYMA15G31958.1 Uncharacterized protein protein coding CNT0001359 770 361 CDS Trans
GLYMA15G31958.2 Uncharacterized protein protein coding CNT0001359 770 361 CDS Trans