Detailed information on CNT0001361 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0001361

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00.099012.3821.17400.2310.10832.67428.73229.68234.13933.43914.1826.416leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01020302.557.512.51517.522.52527.532.53537.5

Peptides detected in this lncRNA

>peptide 1 (227 aa)
NFSYISLFLSLRFLQQPFTFFILSSILCKHQTSTTTMGETKDTHIVEIPVDQEHNHHKNVLCSMTSNMIEAIEDHPLTEISESPGHLLLLKLWQREEELF
SKRIAHKETRMDTIKAELFQLSSFFFIFHAFFLTLLFTSWAKAQQQAHHSVCHKWWLPSMVSLCTSFVFVVLVQVWCFLLPSLSSVACDPWIWLSLEHGL
WWILLRDLLCLCWGMKQIWSDRLGKPF*

>peptide 2 (31 aa)
MQSSNFARRGLEHMSYIHRTTYGRQDAHLFS*

>peptide 3 (40 aa)
MMLIKEASDFNAKFKFCKEGAGAYVIYTQDHLWETGCTFI*

>peptide 4 (38 aa)
QLQLHLSLSLSTLSATTIHIFHSQFNPLQTSNINNNNG*

>peptide 5 (69 aa)
MRGLKVRLIVTWRSFKSVVLSILKATPLVCSRYLQCLGTLSALLFVGIYCEIKYAIHFLELSWQKKIKY*

>peptide 6 (44 aa)
TSVTSLSFSLYAFCNNHSHFSFSVQSFANIKHQQQQWVKQKTPT*

Sequence

>CNT0001361
CAACTTCAGTTACATCTCTCTCTTTCTCTCTCTACGCTTTCTGCAACAACCATTCACATTTTTCATTCTCAGTTCAATCCTTTGCAAACATCAAACATCA
ACAACAACAATGGGTGAAACAAAAGACACCCACATAGTAGAAATCCCAGTAGACCAAGAGCATAATCATCACAAGAACGTGTTGTGTTCCATGACAAGCA
ACATGATTGAGGCCATAGAGGACCACCCTCTAACCGAAATCTCCGAGAGCCCCGGGCACCTCTTGCTCCTGAAGCTATGGCAAAGAGAGGAAGAGCTCTT
CTCCAAACGCATTGCTCACAAGGAGACAAGAATGGATACCATCAAAGCTGAACTCTTTCAACTCTCCTCATTCTTCTTCATCTTCCATGCCTTCTTCCTA
ACCCTCCTTTTCACGTCTTGGGCCAAAGCCCAACAACAAGCCCACCATAGTGTTTGTCACAAGTGGTGGCTTCCCTCCATGGTGTCCCTTTGCACCTCCT
TTGTGTTTGTGGTTCTTGTGCAGGTTTGGTGTTTCCTGCTTCCAAGCTTGTCCTCTGTGGCCTGTGATCCTTGGATCTGGCTCTCCTTGGAGCATGGGCT
TTGGTGGATCTTGCTGAGGGACTTGTTGTGCCTCTGCTGGGGAATGAAGCAGATTTGGTCCGATAGATTAGGCAAACCCTTTTGAATCATGATGTTAATA
AAAGAGGCCTCAGATTTCAATGCAAAGTTCAAATTTTGCAAGGAGGGGGCTGGAGCATATGTCATATATACACAGGACCACCTATGGGAGACAGGATGCA
CATTTATTTAGTTGATTTTTTCATTGATACAAGGATTCATCAAGTCCAGACATTCTCGCAAGGATAAACACTTATTTAGTTGATTTTTTCATTGATACGA
GAAGATTTTTTCCCTTGATTGTGTTGCTGATTTTGGTTAGTTGATGAGGGGTCTCAAAGTACGACTTATTGTTACTTGGAGATCCTTCAAGAGCGTAGTT
CTTTCTATTCTGAAAGCAACACCTCTTGTGTGCTCCAGATATCTACAATGTTTGGGAACTCTTTCTGCACTACTATTTGTTGGAATATATTGTGAAATAA
AATATGCAATTCACTTTTTGGAACTTTCATGGCAAAAAAAAATAAAATATTGAAGTATCTGAAGAGCAATTTTGACTCATTACCATTTGTTGGAAGAAAC
ATGCAAT