Detailed information on CNT0001374 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9C8Z4|HEAT1_ARATH, E-value = 3e-13

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001374

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.2011.6192.10500.352.4170.861.6120000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.6

Peptides detected in this lncRNA

>peptide 1 (37 aa)
KYFVENLKEEYLVFIAEIIPFLDELVEDVELSIKSLA*

>peptide 2 (33 aa)
MTHRLGERYSWFCDMSKELKMCNQTKNIIDRPV*

Sequence

>CNT0001374
TAAATATTTTGTGGAGAACTTGAAAGAAGAGTATCTAGTGTTCATAGCTGAAATAATCCCCTTCCTCGATGAACTGGTTGAGGATGTAGAGCTTTCAATT
AAATCTCTTGCTTAGGAAATTCTGCAGGATATGAAATCTGTGACTGGGGAAAGCCTTTGCCAATACCTATGACACATAGATTAGGAGAGCGGTATTCATG
GTTTTGTGACATGAGCAAAGAGCTAAAGATGTGTAATCAAACAAAAAATATAATTGATAGGCCAGTGTAAATTGTGGTTACTCAAGCAAGGAGGTTGTTG
GTATATTATAGATTTGTATGCATTGAAGTTTGTAGGTTATGTATGCATATTCTATGTTAGCTTAATTTGTTCTGAATGGCAGGGGCATAATATATCGGGG
AAGGATCACCGTGTTCTTTTTTCCATAAATATCAACATAGAGACTTCTGTTGGTTTACTTGAAATTTTTTAAAAGCCATATTTTTCATTCCTTTGTCTGT
ATATATTTATTTATTATTTATTGATGATGGTTTGATTCCATCTTTCTATGTTTGTAAGATATAAAGCCATTTATGTGCCTTCACTTAATACCTTATGCTT
TTAGGAGAATTGGTTCTTGGTATGATATCAAAGCCTCTATGACCAAGTAGTGAGGAGTTTGATCATTGTTGCTCCCATTCTTCTTAAAACAATGTTTAGT
TTTCAGCACAAGGTATATGGTTGACCTGTGCAAGAAGAGTACGTGGAGGAATTTAAAAAATTAAAAAGCGGTTCTAAAGAGAAGAGTACGTGGAGGAATT
TTGAGGAAAC