Detailed information on CNT0001375 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001375

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)9.68911.1077.566000000000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0123456789101112

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MKAILIAFLLLPYVAFVPSSTLAREPKALQQRTLSI*

Sequence

>CNT0001375
GCAAAAGGAAAATTGAATTATATCTACTAAGCATTAAATATCCCCAACCATGAAGGCAATTCTTATTGCATTCTTACTGTTGCCCTATGTGGCTTTCGTT
CCCAGTTCAACTCTAGCTCGAGAACCGAAGGCTCTGCAACAAAGGACTCTTAGTATTTGAAGGAGGACGTATATCATCAAAGTCCACTACAGTCAATTCT
TCTTCTTTTGCTTTCCCCCATAAGACAGCATAAAACCCAAATGAGAGTATCACTGCTCCAACAACGCTACAACGTTTGAAACAAGAAACGTATATATGTC
AAAAAGTGCATTACAAAAAAAG

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G45320.1 Uncharacterized protein protein coding CNT0001375 529 193 CDS Cis
GLYMA08G45320.2 Uncharacterized protein protein coding CNT0001375 529 193 CDS Cis
GLYMA08G45320.3 Uncharacterized protein protein coding CNT0001375 529 193 CDS Cis
GLYMA08G45320.4 Uncharacterized protein protein coding CNT0001375 529 193 CDS_UTR Cis