Detailed information on CNT0001383 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001383

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.26700.260000.29700000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.4

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MSITNSTNIFEKTVFVPWSNQKPNNSVSFQRSANKTLYISNTLSLIA*

Sequence

>CNT0001383
GTTAGTTGAAAGCTGGCTTATTTTGGAACCATTGTGGCCTTTGCTGTACAAGAGTAGAAACTAATGCTAATATTACATTGTGCTTTCTGCTTCAACACCT
GAAATCTAACCAGGGATTTCACAAAATACTAGCTTGTGTGTTTTGGTCTTGTGACAAATATTGTTTCGTTGTGCATGATTTGCTTAGACAGAACCACGAA
ATAACTAAAACAATGTCAATTACTAATAGTACAAACATCTTTGAAAAAACAGTATTTGTTCCATGGTCGAATCAGAAACCAAACAATAGTGTCTCGTTCC
AGAGAAGTGCTAATAAGACACTATATATTTCAAACACACTTTCTCTCATTGCTTAAAATTTATTCTACCTTTGTCTACACATTTTCGTTATATATTTCTT
TTTTCTTTTTTTCATTTTCAATTGACATATTTAAGTGTGCTGACCTGGTCCAATAAAATATTTGATGTC

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA05G30030.1 Uncharacterized protein protein coding CNT0001383 170 98 CDS Trans
GLYMA08G13040.1 Uncharacterized protein protein coding CNT0001383 1242 469 CDS Cis
GLYMA08G13150.1 Protein kinase; Uncharacterized protein protein coding CNT0001383 142 62 CDS Trans